Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0730 ATGGCTTCAGCGAGCAGACCAGCATCAAAATCATTCCCCCGACTTCATACTTCAAGCGCAAGAAATCACATAACTCATTATGGCGCACCCTCAATCAGTAATCCTTTTTCTTTTTACTCGCAGTCCGCTGAGGCATCCACTAATTCTCTCCTCGACCAAGAGATTACAAATTACCAATCGGAAATCCAAAGGCGTGGCTATATTCAACCCTTTGGTTTCGTGATTGTCGTCGACAAGCCCACATTTCGGGTTCTAGGGTACAGTGAAAACGCGTGCGATTTTCTGGGTCTTGATGCGCCACGATCAGTTCCGAGTTTGGAGAAGTCTGAAACTCTCGAGATTGGGTCCGACGTTCGGAATTTCTTGACCCCATTTAGTGTGCTTCAGCTGGAAAATGCATTTGAGGCTCCAGAAATGTCTCAGATGAACCCCATTTTAGTTCGTTCTAAGAATTCTGGGAACCATTTCTATGCGATTCTGCATAAAATTGATGTCGGAGTTGTGATTGATTTCGAACCTGCCAGAACAGAGGATCCTGAGTTATCCATTTCAAGGTCGATGCAATCTCAGAAGCTAGCGGGGCGTGCGATTTCGCTATTAAAATCGTTTCCATGTGGGCATATTAAGCATCATTGTGATGTTATAGTTGAAAGTGTTAGAGAACTTACCGGCTATGATAGGGTAATGGTTTATAAATTTCTTGAAGATGAGAATGGTGAGGTTGTTTTTGCAGAGAGTAAGAGGCCAGACTTAGAGCCTTATATTGGTTTGCACTATCCTTCTTCTGATATTCCTCAGGATTTGAAGTTGTTGTTAAAGCAGAATCGAATTAGCATGATTGTGGATTGCCAAGAAACTCCTGTTCATGTAATTCAAGATGAAGGTCTCTTGCAGCCTTTGTGCTTAATTGAATCAACCCTTCTTGCCCCAAATGACTGGCATGCCAAGTACATGGCCAATATGAGATCAACTGGTTCATTAGTTATGGCAATAGCCTTTGAGCTCCAACTGAATGTGGAACTTCAATTGGAATCAGTATCATTGGAGAAACAAGTTCTGAGGACCCAAACTGTCTTATATGATATGCTGCTTAGGGACTCTCCAATTGGTATTGTTACTCAATCTCCAAGTATTATGGACCTTATGAAGTGTGATGGAGCAGCTCTTTACTACCATGGAAACTACTATCCCTTAGGTATCACTCCAAATGAGTCCCAATTAAAGGACATTATAGAGTGGTTGATGGCCTTCCATGGAGATTCAACAGGCTTAAGTACTGATAATCTGGCTGATGCAGGTTATCCTGGAGCTGTCTCTCTTGGTGATTCTGTTTGTGGAATGACTGTTGCTTATATCACAGAGAAAGATTTTCTGTTCTGGTTCAGATCCCGTGCAGCAAAAGAGATCAAACGGGATGGTGCAGAGGATTTGGAAATGAATGCAGTTCACTCTTTGCAGCTTATCCTACAAGAATCAATGAAGGATGTTGAGCTTGAGCATAGCAATTCTAAGTCTTTTGGTGTGGATGATCTGATTTGGATGGCCAAAGAAATGGTTAGATTGATAGAAACTGCCATTGCTCCCATATTGTCTGTGGATGTTTGTGGACAAGTAAGCGGGTGGAATGCTAAGGTTGCGGAATTGACTGGACTTTCAGTTGAGGAAGCTGTGGGAAAGTCATTGGCTCATGATCTTGTGCATAAGGAGTCTGAAGAAACTGTTGATAGGCTTATTTCTTGTGCTTTAAGAGGTGAAGAAGATAAGAATGTTGAGATAAAATTAAGGACCTTTGGCTCACAATACTATAAGATGGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATCCTATGGATGAAATCACTGGAGTATGCTTTATTGGTCAGGATGTTACTGATAAGAAACTGGTAATGGACAAGTTTATCCACTTACAAGGTGACTACGAGGCCATCGTACATAACCCGAGCCCATTGGTCCCTCCCATTTTTGCGTTGGATGCCAAAACATGCTGTTCAGAGTGGAACACTGCCATGGAAAAGCTTACGGGTTGGGTTCGTGGGGATGTCATTGGGAAATTGTTGGTGGGAGAGGTCTTTGGTAATTGTTGTAAACTGAAGGGTTTGAATGCTCTAGCCAAGTTCTTGACTGTCTTGCACAATGAACATGGTGGACAGGACACAGAAAAATTCCCATTTTCATTCCTTGACCGGCACGGAAACTTTGTGCAAGCTCTTTTGACTGCACACAAGAGGGTTAACTCAGATGGTCAGGTCATTGGGGTTTTCTTCTTCTTGCAAACTGCAAGTCCTGAACTTCAACAGGTTCTGGATGTCCAGAGTAAAATGGAGAAGAATTGCCTTGCTGCTATGAAAGAATTAGCTTACGTTCGTCAACAAATGAAAAAACCTTTGAGTGGAATACGCTTTACTAACTTTCTTTTGAAGGGTACAGAATTGACTGATGATCAAAATCAGTTTCTTGAGGTTGGTGATGCTTGTGAGAAGCAGATTTTCAGGATAATACATGATGTGGACTTGGAGAGAATTGAGCACAGGTCCTTGGAGCTTGAGGAGGAGGAATTCCTACTTGGGAATGTAGTAAATGCAGTGGTTAGCCAAGTGATATTATCACTTAGAGAGAGACATTTACAGTTGATTTGTGATATACCTGAAAATATCAAGACACTGATCGTTTATGGAGATAAATTGAGGATTCAACAGGTTTTGGCTGATTTCTTAATGAACATTGTGCGTTATGCTCCATCTCCAGATGGTTGGGTTCAAATTGATGTTGATCCTAAATTAAAGCAAATTTCTGATGGACTTGCTCTTCTGCATACTACATTCAGGATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAATTGATTAAAGACATGTTCCATGAAAGTGAGTGGAGGAGTGAAGAAGGGTTAGGGCTTAGCATGAGCAGGAAGATCTTGAAGCTAATGGATGGTGAGGTCCAATACATCAGTGAGGCTGAAACATGCTTTTTCTTCGTTGTTCTTGAACTACCCTTAATTCGTTGA 3051 0.4186 MASASRPASKSFPRLHTSSARNHITHYGAPSISNPFSFYSQSAEASTNSLLDQEITNYQSEIQRRGYIQPFGFVIVVDKPTFRVLGYSENACDFLGLDAPRSVPSLEKSETLEIGSDVRNFLTPFSVLQLENAFEAPEMSQMNPILVRSKNSGNHFYAILHKIDVGVVIDFEPARTEDPELSISRSMQSQKLAGRAISLLKSFPCGHIKHHCDVIVESVRELTGYDRVMVYKFLEDENGEVVFAESKRPDLEPYIGLHYPSSDIPQDLKLLLKQNRISMIVDCQETPVHVIQDEGLLQPLCLIESTLLAPNDWHAKYMANMRSTGSLVMAIAFELQLNVELQLESVSLEKQVLRTQTVLYDMLLRDSPIGIVTQSPSIMDLMKCDGAALYYHGNYYPLGITPNESQLKDIIEWLMAFHGDSTGLSTDNLADAGYPGAVSLGDSVCGMTVAYITEKDFLFWFRSRAAKEIKRDGAEDLEMNAVHSLQLILQESMKDVELEHSNSKSFGVDDLIWMAKEMVRLIETAIAPILSVDVCGQVSGWNAKVAELTGLSVEEAVGKSLAHDLVHKESEETVDRLISCALRGEEDKNVEIKLRTFGSQYYKMAVFVVVNACSSKDPMDEITGVCFIGQDVTDKKLVMDKFIHLQGDYEAIVHNPSPLVPPIFALDAKTCCSEWNTAMEKLTGWVRGDVIGKLLVGEVFGNCCKLKGLNALAKFLTVLHNEHGGQDTEKFPFSFLDRHGNFVQALLTAHKRVNSDGQVIGVFFFLQTASPELQQVLDVQSKMEKNCLAAMKELAYVRQQMKKPLSGIRFTNFLLKGTELTDDQNQFLEVGDACEKQIFRIIHDVDLERIEHRSLELEEEEFLLGNVVNAVVSQVILSLRERHLQLICDIPENIKTLIVYGDKLRIQQVLADFLMNIVRYAPSPDGWVQIDVDPKLKQISDGLALLHTTFRMVCPGEGLPPELIKDMFHESEWRSEEGLGLSMSRKILKLMDGEVQYISEAETCFFFVVLELPLIR 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0730 1016 ProSiteProfiles PAS repeat profile. 514 585 IPR000014 -
Alju13g0730 1016 SUPERFAMILY GAF domain-like 349 492 - -
Alju13g0730 1016 ProSiteProfiles Histidine kinase domain profile. 796 1016 IPR005467 -
Alju13g0730 1016 Pfam PAS fold 58 174 IPR013654 GO:0006355
Alju13g0730 1016 ProSiteProfiles PAS repeat profile. 648 700 IPR000014 -
Alju13g0730 1016 SMART HisKA_10 790 853 IPR003661 GO:0000155|GO:0007165
Alju13g0730 1016 NCBIfam PAS domain S-box protein 521 636 IPR000014 -
Alju13g0730 1016 Gene3D PAS domain 511 645 - -
Alju13g0730 1016 PRINTS Phytochrome signature 122 144 IPR001294 GO:0006355|GO:0009584
Alju13g0730 1016 PRINTS Phytochrome signature 651 667 IPR001294 GO:0006355|GO:0009584
Alju13g0730 1016 PRINTS Phytochrome signature 222 241 IPR001294 GO:0006355|GO:0009584
Alju13g0730 1016 PRINTS Phytochrome signature 308 329 IPR001294 GO:0006355|GO:0009584
Alju13g0730 1016 PRINTS Phytochrome signature 670 685 IPR001294 GO:0006355|GO:0009584
Alju13g0730 1016 SUPERFAMILY PYP-like sensor domain (PAS domain) 662 764 IPR035965 -
Alju13g0730 1016 Gene3D - 335 477 IPR029016 -
Alju13g0730 1016 Pfam GAF domain 212 332 IPR003018 GO:0005515
Alju13g0730 1016 CDD PAS 525 632 IPR000014 -
Alju13g0730 1016 FunFam Phytochrome 852 1016 - -
Alju13g0730 1016 CDD HisKA 794 849 IPR003661 GO:0000155|GO:0007165
Alju13g0730 1016 PANTHER TWO-COMPONENT HISTIDINE KINASE 39 449 - -
Alju13g0730 1016 SMART HKATPase_4 901 1013 IPR003594 -
Alju13g0730 1016 CDD HATPase_Phy-like 900 1012 IPR044767 -
Alju13g0730 1016 Gene3D PAS domain 61 311 - -
Alju13g0730 1016 Gene3D PAS domain 661 771 - -
Alju13g0730 1016 FunFam Phytochrome 346 486 - -
Alju13g0730 1016 FunFam Phytochrome 510 642 - -
Alju13g0730 1016 Pfam His Kinase A (phospho-acceptor) domain 794 852 IPR003661 GO:0000155|GO:0007165
Alju13g0730 1016 SMART pas_2 516 583 IPR000014 -
Alju13g0730 1016 SMART pas_2 647 717 IPR000014 -
Alju13g0730 1016 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 901 1009 IPR003594 -
Alju13g0730 1016 Gene3D - 60 334 IPR029016 -
Alju13g0730 1016 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 207 337 IPR016132 -
Alju13g0730 1016 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 846 1008 IPR036890 -
Alju13g0730 1016 SUPERFAMILY PYP-like sensor domain (PAS domain) 523 634 IPR035965 -
Alju13g0730 1016 Pfam Phytochrome region 354 476 IPR013515 GO:0006355|GO:0009584
Alju13g0730 1016 Gene3D - 836 1008 IPR036890 -
Alju13g0730 1016 Pfam PAS fold 517 632 IPR013767 GO:0006355
Alju13g0730 1016 Pfam PAS fold 648 767 IPR013767 GO:0006355
Alju13g0730 1016 Gene3D - 346 465 IPR043150 -
Alju13g0730 1016 SUPERFAMILY PYP-like sensor domain (PAS domain) 60 177 IPR035965 -
Alju13g0730 1016 SUPERFAMILY GAF domain-like 187 333 - -
Alju13g0730 1016 CDD PAS 659 767 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0730 Alju-ChrAlju13 24365262 24370130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0730 16 1014 Histidine Kinase Gene Family AT4G16250 55.515 0.0 1187