Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0678 ATGAGATCAGCTTGTTCTTCGGGGGTTGTGGTGAAGAGCAGGAACTCTTCGGGCTGTTTAATTGTTAGAAAGAAAGATGGGTTGGGTGGTGAATATCGTTCTTCAAGCAACTCTCGCAAGTTGTATGAGTCACAGGTTAGGAAAAGGCCTAGTATGGCTCTGAGTGATTCAGAATCAAGTGATGATGACTCGCTGATGCCTCCAAGTAGAAGACTTGGTCCTGACACTCTTCGAGCCTGTAATGGTTTCACTGCTTCAGAGCGAGGTATAGTTGAAGGCAATGAAATTGGTAGAAAGAGGGATAGAATGACGCAAATCAGGCGTAATGAGGATGCTATGATTGAGAAGAATGGTTTCGAGCAGAGAAAAAGAAAGAAGACTAAAATGGAAGTCTTTGATTTTGATGAACATGGCGGTATGGATGTGGAAAATATGAAGAGGAGGTATTTTTATGACAATGACGGAGTAGGTTTTGGGGGACGAAGGTTTATGGGACAAATGCATGCCACAAGAAGTGGCTTTGAGAGTAAATTTGACAAAGTGTCTAGCAGACACACTCTTGATGATAGAAACAACTCCTATTATGGCAAGCATAGTGGATTGTTTCTGGGAGATACTGTTGACCCCAGCAGGTTCAATGTGAATAGGGATGATGCTTGCCTAAGTCTACCCTTGCCGAAAGATAAGTTTATCAGGGTTCAGGGGAAAAATGGTGTTTTAAAGGTTCTGGTTAATAGGAATAAGGTGGGTGGCCCATCAGAGTACTATAATCACCACAAACCTATAGAAAACAGACAGAATTTGCAGACTGAGGCCCCTACAAAGCGGAATATTCCAGTCCATTCTTCATCATACTCAGAAACTAAACTCGTTGAGAAGCCAGGTCTAGTTGTTAGGCCGGGGAAAAAACAGATAGCATCAAGAAAATCTTTGTCAATTAAGGACAGCAAGGGACGTGATTGGGACTCTGAGGACTGTGACACACCACTGAATCAAGGACTAGAAAATACTAAACCCTTCAAGTCTGTGAAGAGGGTAGGTTCTGAGGATGAAAAGACTCCACGTGAGAAGCTTCCACCTACAATAATTAAAGACGGAAAAGAAGGAAAAGTAAAGCGTGGGAGTGGTACAGAAAAACAGAAACTGCGAGAAAAAATAAGGGAGATGCTGCTGAGTTCTGGTTGGACTATAGATTATCGGCCTCGAAGGAACAGAGACTATCTAGATGCAGTTTACATCAATCCAGGGGGTACCGCCTACTGGTCAATAATTAAAGCATATGATGCTCTTCAAAAGCAATTGAATGGTGATGATATTGAGGCCAAGCCCGTGGGTGATGGTTCTTCCTTTGCCCGGATCTCAGATGATCTGCTGAGTCAATTAACAAGGAGAACTCGGAAGAAGATGGAAAAAGAATTGAAGAAGCAGCAAAGAGATGGTAGTGAGAGTGATAGTGAAATGGAACCTGACCTTAAAAGATCTGCCGATTTCAGCCATGATATGAATAGCATGGATAGTGATAGCAATGAAGAGAAATTAAGCTCTTTTATAAAGAAGGGTAGTAATTCAATGAAAAATAAGCTGATTGAAAATGTTGCCAGCATTAGCTTTAAATCCCAGAAATCAACCCATCACATACGAGATGGAACTGAAAATTCATTGTCTGGATGTGATCCTCATCATCCACATGGGAGGAAAAGTACAAAACATAGAAGATGTACTTTGTTAATCCGTAGTTCCAATAAGGGAGTGAATTCGGAATCTGATGGCTTTGTTCCATATACAGGCAAAAGAACAGTGCTTTCCTGGTTGATTGACTCTGGGACAGTTCAGTTGAGCCAAAAGGTTCAGTACCGCAAACGAAAACGAGTGATGCTGGAGGGATGGATCACAAGAGACGGCATTCATTGTGGATGTTGCAGTAAAATCCTTACAGTTTCCAAGTTTGAGATTCATGCAGGTAGTAAATTGCGCCAGCCATTTCAAAACATATATTTGGATTCAGGAGTATCACTTCTACAGTGCCAAATAGATGCATGGTTGAGACAGGAGAATTCAGAGAAAATTAATTTTCATTCTGTTGATGTTGATGGCAATGATCCACATGATGACACTTGCGGTACATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGAATATACAGATGCTTCCTCCTGGTGAGTGGCATTGTCCAAAATGCACCTGCAAATTTTGTGGAATGGCCAGTAGGACTGTTAAAAAAGGAGATGATGCTGTATATGCTCTTGTCACTTGCAACTTGTGTGAGAAAAAATACCATGAATCTTGCACTAAGGATATGGATGCTATTTCTATCAACTCAGATATGTCAGGCTTTCATTTTTGTGGAAAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTAGGTACTAAGCATGAGCTAGAAGCAGGCTTTTCATGGTCTGTTATTCGTAGAGAAGATGAAGATTCAGAGGCAGCTGGTAGAGGAATTTTTCAAAGGGTGGAATGCAACTCTAAGCTAGCTGTTGCACTGACTGTGATGGATGAATGCTTTTTACCCATTATTGACCAGAGGAGTGGCATCAATTTAATTCATAATGTTCTATATAATAGTGGATCAAACTTCAGTAGGTTGAATTATAGTGGCTTTTACACAGCTATTCTAGAGAGGGGCGATGAAATAATTTCTGCAGCATCTATCAGGTTCCATGGGACTAAGTTGGTGGAGATGCCATTTATTGGAACTCGCCGTATGTACAGGCGCCAGGGGATGTGCCGTCGGCTTTTTTCTGCCATTGAATCGGCCCTCTGCTTTATGAAGGTTGAGAAAATGGTTATTCCAGCAATTGCTGAACTCACACAAACATGGACAGCAATCTTTGGCTTTATACCTCTTGAAGAATCACTCAGGCACGAAATGAGGTCTTTGAATATGCTGGTCTTCCCTGGTATTGATATGCTGCAGAAGTTGCTGGTGGAGCAAGGGGACTTTGAAGAGAACACAACTTCCACAGGTGCTGATAAAATGGACCATGGAGACAAAGTTTCTACTAAGCCAAAATTGGCTAATAGGTCATTGGCTAATTCCTCATCTCATCTAGTTATTAATGGAAGCGATGATGCTGGTTCAGATCCTCTTAATGAGATAAAAGATGAATGTAGTGATGCTTCTTTGGATCAAATCAATCAAGTTTTGTCTGACAAGATTGTATGTTCCAAATCATGTTCTGAGGATAGGCTATCTGACTCAGCTTCAGATAGATGTTCTTCTCCCTCTAGTACCAGTCATGATGTGTTGGAGATGGAAAATAAAGTGGGGGCTTCTCCATCATTGAAAGATAATCTGCATATGTCTACTGATTGTCAAGGAAATTCTCTGAATGACACTCAATATATACATCCATCCAATGCTCCAGATGGCCCGGAAAATTGTACTTTGGTTCAGAGAGCTGCTACTTCTGATCCTAATTCTACAAAAAACTTGGTTGAACCTGTTTCTGACTGGGAAGGTCGTTTCCCTACTGCTATAAATGGTGATTCATCTGAGTTTGAGATGAACCTGATGTTGGATTCTCAAATGATGGATAATACTGCTACCACTGTTAGGGAGGTTGACATGAATGATTTTCAAGAGGAACAGGAAGATGTTCCTTTCGGGAGTTTGTCCCAAGAGGACGATGTTACCAACAATAACATTGAAAATACAGATGTGTCTGATTCTGAACTAAACCATGAAGAAAAGAATGAAACTGAGTATGAAGGGGAAAGAAACACATATATTGACACTGAAGTTGCTTCAAAAGGAATGCAATTTTATGGAAGTGGCATGAATGAACCCAGTGATAGTTCTGAGACTGATTCGGAGTAA 3909 0.4103 MRSACSSGVVVKSRNSSGCLIVRKKDGLGGEYRSSSNSRKLYESQVRKRPSMALSDSESSDDDSLMPPSRRLGPDTLRACNGFTASERGIVEGNEIGRKRDRMTQIRRNEDAMIEKNGFEQRKRKKTKMEVFDFDEHGGMDVENMKRRYFYDNDGVGFGGRRFMGQMHATRSGFESKFDKVSSRHTLDDRNNSYYGKHSGLFLGDTVDPSRFNVNRDDACLSLPLPKDKFIRVQGKNGVLKVLVNRNKVGGPSEYYNHHKPIENRQNLQTEAPTKRNIPVHSSSYSETKLVEKPGLVVRPGKKQIASRKSLSIKDSKGRDWDSEDCDTPLNQGLENTKPFKSVKRVGSEDEKTPREKLPPTIIKDGKEGKVKRGSGTEKQKLREKIREMLLSSGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLNGDDIEAKPVGDGSSFARISDDLLSQLTRRTRKKMEKELKKQQRDGSESDSEMEPDLKRSADFSHDMNSMDSDSNEEKLSSFIKKGSNSMKNKLIENVASISFKSQKSTHHIRDGTENSLSGCDPHHPHGRKSTKHRRCTLLIRSSNKGVNSESDGFVPYTGKRTVLSWLIDSGTVQLSQKVQYRKRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWLRQENSEKINFHSVDVDGNDPHDDTCGTCGDGGDLICCDGCPSTFHQSCLNIQMLPPGEWHCPKCTCKFCGMASRTVKKGDDAVYALVTCNLCEKKYHESCTKDMDAISINSDMSGFHFCGKECKELFEHLKKYLGTKHELEAGFSWSVIRREDEDSEAAGRGIFQRVECNSKLAVALTVMDECFLPIIDQRSGINLIHNVLYNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLVEMPFIGTRRMYRRQGMCRRLFSAIESALCFMKVEKMVIPAIAELTQTWTAIFGFIPLEESLRHEMRSLNMLVFPGIDMLQKLLVEQGDFEENTTSTGADKMDHGDKVSTKPKLANRSLANSSSHLVINGSDDAGSDPLNEIKDECSDASLDQINQVLSDKIVCSKSCSEDRLSDSASDRCSSPSSTSHDVLEMENKVGASPSLKDNLHMSTDCQGNSLNDTQYIHPSNAPDGPENCTLVQRAATSDPNSTKNLVEPVSDWEGRFPTAINGDSSEFEMNLMLDSQMMDNTATTVREVDMNDFQEEQEDVPFGSLSQEDDVTNNNIENTDVSDSELNHEEKNETEYEGERNTYIDTEVASKGMQFYGSGMNEPSDSSETDSE 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0678 1302 Coils Coil 459 479 - -
Alju13g0678 1302 MobiDBLite consensus disorder prediction 1093 1113 - -
Alju13g0678 1302 ProSitePatterns Zinc finger PHD-type signature. 706 745 IPR019786 -
Alju13g0678 1302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 785 IPR013083 -
Alju13g0678 1302 MobiDBLite consensus disorder prediction 1099 1113 - -
Alju13g0678 1302 Pfam Tify domain binding domain 628 678 IPR032308 -
Alju13g0678 1302 CDD PHD2_CHD_II 706 745 - -
Alju13g0678 1302 MobiDBLite consensus disorder prediction 28 75 - -
Alju13g0678 1302 PANTHER PHD FINGER PROTEIN 12 367 1149 IPR042163 GO:0003714|GO:0045892
Alju13g0678 1302 SUPERFAMILY FYVE/PHD zinc finger 695 752 IPR011011 -
Alju13g0678 1302 MobiDBLite consensus disorder prediction 467 510 - -
Alju13g0678 1302 MobiDBLite consensus disorder prediction 540 570 - -
Alju13g0678 1302 MobiDBLite consensus disorder prediction 1234 1270 - -
Alju13g0678 1302 SMART PHD_3 747 805 IPR001965 -
Alju13g0678 1302 SMART PHD_3 705 746 IPR001965 -
Alju13g0678 1302 MobiDBLite consensus disorder prediction 1236 1251 - -
Alju13g0678 1302 MobiDBLite consensus disorder prediction 308 326 - -
Alju13g0678 1302 MobiDBLite consensus disorder prediction 342 378 - -
Alju13g0678 1302 MobiDBLite consensus disorder prediction 1252 1270 - -
Alju13g0678 1302 MobiDBLite consensus disorder prediction 301 378 - -
Alju13g0678 1302 Pfam PHD-finger 706 748 IPR019787 -
Alju13g0678 1302 ProSiteProfiles Zinc finger PHD-type profile. 703 748 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0678 Alju-ChrAlju13 23694722 23700794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0678 2 1032 PHD Transcription Factor Family AT4G14920 47.574 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju13g0678 TDBD 1.1e-21 No_clan