Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0677 ATGGGTTTCTCGAGATTCAAAGCTCTTACGATACTAGTTGATTTGGAAATGTACTTTGAGAATGGTAGTATGGCTGGTTTTGTTGCTTTGAATTGTTATGGTTTCAGTAGTTCAAATATAAGAGCTTCCCCTTCAATAAAACCGTACTCTGTTTCTGCTTTCTCATACCCTTGCTTCCCGCCTCTAGAGAGAGACAGAGCGCCGAAGAGTGAGAAATCATTAGCCATGTCTCTTGTAGCGAACGAGGATTTTCAGCACATTCTTCGTGTTCTTAACACTAATGTAGATGGTAAGGAGAAGATCATGTTCGCCCTTACTTCCATCAAAGGTATTGGTCGTCGCTTCGCCAATATCGTCTGCAAGAAAGCCGACGTTGATATGAACAAAAGGGCAGGTGAACTGTCAGCTGCTGAACTTGATCAGCTAATGACAATTGTGGCAAATCCACGCCAATTCAAGATTCCTGACTGGTTTCTCAACAGGAAGAAGGATTACAAGGATGGAAAATACTCTCAGGTTGTTTCCAACGCATTGGACATGAAACTCAGGGATGATCTTGAGCGTTTGAAGAAAATAAGAAACCACCGTGGTCTGCGACACTACTGGGGTCTTCGGGTTCGTGGACAGCACACCAAGACCACAGGACGCAGGGGGAAGACTGTTGGTGTCTCTAAGAAGCGTTAA 684 0.4415 MGFSRFKALTILVDLEMYFENGSMAGFVALNCYGFSSSNIRASPSIKPYSVSAFSYPCFPPLERDRAPKSEKSLAMSLVANEDFQHILRVLNTNVDGKEKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAAELDQLMTIVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0677 227 Hamap 30S ribosomal protein S13 [rpsM]. 87 227 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Alju13g0677 227 ProSiteProfiles Ribosomal protein S13 family profile. 90 220 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Alju13g0677 227 ProSitePatterns Ribosomal protein S13 signature. 196 209 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Alju13g0677 227 FunFam 40S ribosomal protein S18 167 218 - -
Alju13g0677 227 SUPERFAMILY S13-like H2TH domain 88 223 IPR010979 GO:0003676
Alju13g0677 227 Gene3D 30s ribosomal protein s13, domain 2 167 217 IPR027437 -
Alju13g0677 227 Gene3D - 76 155 - -
Alju13g0677 227 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 77 227 - -
Alju13g0677 227 FunFam 40S ribosomal protein S18 76 155 - -
Alju13g0677 227 Pfam Ribosomal protein S13/S18 89 217 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0677 Alju-ChrAlju13 23682011 23684468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0677 76 227 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 96.053 3.61e-108 306