Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0645 ATGCGGTCGCGACCGTCGGCCTTTGATGCTCTCATGTCCGGGGCTCGTGCCGCCGCCGAGAAGAAGCCCTGGTCTCCCTGTAAACGAAACCTGAATTTTAATTCAACCCATAATCCTAAACTCCTTAATAGAACGGAAAGTACTGGTCAGTTTCCGGAACCCAGTTGCGCTGATATTAGAGATTCCGGGCCGAAGAGAATGCGCGTTGTAGGTTCCCAGGAGAAGATTACAGAACTGAAGAAAAAAGTTTCTCTCTTGAAGAAGAAGCCTGCAGATTTTGACCCTACTTCGATATCTTGTTGGCACAAGGGTGAACCTGTGCCCTTTCTGTTTCTCTGTTTGGCATTTGATATGATTGCTGAAGAAACTGGACGGATTGTGAGTACAGATATAGTGTGCAATATGCTGAGGACTGTCATGAACACTACACCCGAGGATCTGGTGGCTGTTGTTTATCTTTTGGCAAATAAGATTGCTCCTTCACATAAAGGGTTGAAATTGGGAATAGGGGATGCTTCAATTATTAAGGCGCTTGCAGAGGCATGTGGAAGATCCAAGGTGCAGATAAAAAATCAGTATAAGGAAAAAGGTGATTTGGGCCTTGTTGCCAAAGCAAGCCGATCATCTCAACCAATGATGCGGAAGCCTGATTCATTAACTATTAGGAAGGTTTTTGACGCCTTTCGTCTAATTGCTGAGGAATCTGGTGAAGACAGCCAAGGGAAGAAAGAGAATCACATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCAGTATCTAATTCGTCTGCTTCAGTCAAAGTTGCGAATTGGGTTTGCCGAGCAAACTCTCCTAGCTGCATTGGGCCAGGCTGCAGTGTACGCGGAAGGACATTCTGTACCTCCTGCTGAAGTTCAGTCCCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAGGTGTATTCTGTTCTTCCTGTGTATGACAAAATAATTCCTGCATTGCTTAGTGGTGGTGTATGGAAACTTCCGGAGACGTGCAACTTTACTCTTGGTGTTCCGGTTGGACCTATGTTGTCTAAAGCAACTAAGGGTATTACTGAAGTTCTAAATAAATTCCAGGATGTCGAATTTACTTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGATAATGGAACAGTTGAGATTTACAGTAGAAATGCTGAACAGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTATTTCAAGGCTAAAGAAATTGTCTGTATCATCATTTGTTCTTGATTGTGAACTTGTGGCTTATGACCGGGGGAAAAAGAAAATTCTTCCTTTTCAGGTTCTCAGCACTCGAGCTCGGAAAAATGTTTCTATGAGTGATATAAAAGTCGATGTGTGCATATTTGCCTTTGATATCTTGTATCTCAATGGTAAGCCACTACTTCAAGAAACCCTAAAGATCCGGAGAGAGCATCTCTATGCCTCTTTCGAGGAAGAACCTGGGTTTCTTCAGTTTGCAACTGCAATAACATCAAATGATGTTGAGGAAATACAGAAGTTTCTCGATGCAGCAGTTGATGCTAGTTGTGAGGGTTTAATTATCAAAACTTTATATGAAGATGCTACATACGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGAAAATATTGGGGACTCACTCGATTTGGTGCCTATTGCTGCTTTTCATGGTCGTGGAAGACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGCTATGACAGCAATAATGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGAAGAGCGTTCTGCTAGTCTTCGTTCCAAAGTGATTCCCAAACCAAAGCCTTATTATCAATATGCAGAGACAATCAATCCTGATGTATGGTTTGAAGCTTCTGAGGTGTGGGAAGTGAAAGCAGCAGACTTGACCATTAGCCCCGTTCACCGTGCTGCAGTAGGCATAGTAGATTCGGATAAGGGCATATCTCTTCGGTTCCCTCGTTTAGTTCGAGTTCGGGATGACAAAGTTCCTGAACAAGCCTCTTCATCTGAGATGGTAAAGAAAAATCTTCTAATCAGACTAATTAATTGCACATGA 2142 0.4286 MRSRPSAFDALMSGARAAAEKKPWSPCKRNLNFNSTHNPKLLNRTESTGQFPEPSCADIRDSGPKRMRVVGSQEKITELKKKVSLLKKKPADFDPTSISCWHKGEPVPFLFLCLAFDMIAEETGRIVSTDIVCNMLRTVMNTTPEDLVAVVYLLANKIAPSHKGLKLGIGDASIIKALAEACGRSKVQIKNQYKEKGDLGLVAKASRSSQPMMRKPDSLTIRKVFDAFRLIAEESGEDSQGKKENHIKGLLVAATDCEPQYLIRLLQSKLRIGFAEQTLLAALGQAAVYAEGHSVPPAEVQSPLEEAAKIVKQVYSVLPVYDKIIPALLSGGVWKLPETCNFTLGVPVGPMLSKATKGITEVLNKFQDVEFTCEYKYDGERAQIHYMDNGTVEIYSRNAEQNTGKFPDVVAAISRLKKLSVSSFVLDCELVAYDRGKKKILPFQVLSTRARKNVSMSDIKVDVCIFAFDILYLNGKPLLQETLKIRREHLYASFEEEPGFLQFATAITSNDVEEIQKFLDAAVDASCEGLIIKTLYEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGRRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSASLRSKVIPKPKPYYQYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKVPEQASSSEMVKKNLLIRLINCT 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0645 713 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 374 382 IPR016059 GO:0003909
Alju13g0645 713 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 57 703 - -
Alju13g0645 713 FunFam DNA ligase 559 706 - -
Alju13g0645 713 Pfam DNA ligase N terminus 108 283 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju13g0645 713 CDD OBF_DNA_ligase_I 562 701 - -
Alju13g0645 713 FunFam DNA ligase 350 556 - -
Alju13g0645 713 SUPERFAMILY Nucleic acid-binding proteins 562 701 IPR012340 -
Alju13g0645 713 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 342 560 - -
Alju13g0645 713 Gene3D DNA ligase/mRNA capping enzyme 379 504 - -
Alju13g0645 713 NCBIfam ATP-dependent DNA ligase 167 702 IPR000977 GO:0003910|GO:0005524|GO:0071897
Alju13g0645 713 FunFam DNA ligase 85 352 - -
Alju13g0645 713 ProSiteProfiles ATP-dependent DNA ligase family profile. 456 592 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Alju13g0645 713 MobiDBLite consensus disorder prediction 35 64 - -
Alju13g0645 713 Gene3D - 360 559 - -
Alju13g0645 713 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 90 341 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju13g0645 713 MobiDBLite consensus disorder prediction 35 52 - -
Alju13g0645 713 Pfam ATP dependent DNA ligase C terminal region 579 690 IPR012309 GO:0003910|GO:0006281|GO:0006310
Alju13g0645 713 Gene3D - 563 705 IPR012340 -
Alju13g0645 713 Gene3D - 85 352 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju13g0645 713 Pfam ATP dependent DNA ligase domain 350 554 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Alju13g0645 713 CDD Adenylation_DNA_ligase_I_Euk 339 557 - -
Alju13g0645 713 ProSitePatterns ATP-dependent DNA ligase signature 2. 528 554 IPR016059 GO:0003909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0645 Alju-ChrAlju13 23213296 23219612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0645 3 701 Core DNA Replication Machinery Family AT1G08130 68.646 0.0 1022