Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0630 ATGGCTCCTACTCCTTCTTCAACTAAACCCACCAAAAAACAAGGGAAAGGAAGACGGAAGATCGAGATTAAGAGAATTGAGAAATCCAGCAAGCGTCTCGTCACCTTCTCCAAACGGAAATTGGGGCTTTTTCGCAAAGCCGCTGAGCTTTCTCTGCTTTGTGAATCTGAAATCGCCGTTGTCATCTTTTCTCAGCAGGGCAAGGTGTTCTCCTCTGGCTACCCCAATCCTGACTCCGTCATCCGCCGTTACCTCTCCTCCGGCAGGTTCTCTTCCTCCTCCGACCTCTCGTCAGTAGTTGGGGAAGGAGAATCATCGGAGGTGTCGTCGCTGAGGTGGGAATATGAGGAGGCAATGAAGGTTTTGGAAGATGAGAAGAAATCACTGAACGCTGGGTCGGGTTCTGGAGACGGGTCATGGTGGAACCGCTCGGCTGGGGAGATGGATTTGGAGGAAGTCCAGGAGTTCAAGGAAAGGCTTCAACGGTTAAGGCTCAATCTTGTTGCTGCGGCGGAGGAGAAGATTACTACTACTACTACGGCGGCTTCCCCAGTCACTTTGCCGCCGCCCACGGAGGAGAAGATGACTACTGCTATGACGGCTTCGGTGGTGACTTTGCCGCCGCCTGCGGAGGAGGAGGAAAGTTTGTTCATGTCTATGTTGAACGATGATTTGGGTGTGGCTAAGAATGATCAAACATGGAATTGGGACTGGGATTCCTTGATTGACACTACAGGCTGGAATGGTTCTTCTTCTCTGGTTTGGAACAGTGATGTTAGCAAGGGTTTATATTAA 795 0.5057 MAPTPSSTKPTKKQGKGRRKIEIKRIEKSSKRLVTFSKRKLGLFRKAAELSLLCESEIAVVIFSQQGKVFSSGYPNPDSVIRRYLSSGRFSSSSDLSSVVGEGESSEVSSLRWEYEEAMKVLEDEKKSLNAGSGSGDGSWWNRSAGEMDLEEVQEFKERLQRLRLNLVAAAEEKITTTTTAASPVTLPPPTEEKMTTAMTASVVTLPPPAEEEESLFMSMLNDDLGVAKNDQTWNWDWDSLIDTTGWNGSSSLVWNSDVSKGLY 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0630 264 Gene3D - 29 89 IPR036879 GO:0003677|GO:0046983
Alju13g0630 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 71 IPR002100 GO:0003677|GO:0046983
Alju13g0630 264 Coils Coil 153 173 - -
Alju13g0630 264 SUPERFAMILY SRF-like 17 87 IPR036879 GO:0003677|GO:0046983
Alju13g0630 264 CDD MADS_MEF2_like 17 85 IPR033896 GO:0000977|GO:0045944
Alju13g0630 264 MobiDBLite consensus disorder prediction 1 22 - -
Alju13g0630 264 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Alju13g0630 264 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Alju13g0630 264 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Alju13g0630 264 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Alju13g0630 264 PANTHER MADS BOX PROTEIN 18 167 - -
Alju13g0630 264 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0630 Alju-ChrAlju13 22969643 22970437 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0630 17 189 Type I MADS-box Gene Family AT2G24840 34.783 5.97e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju13g0630 SRF-TF 4.2e-20 No_clan