LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju13g0626	ATGGCTCCTACTCCTTCTTCTTCAACTAAACCCACCAGAAAACAAGGGAAAGGCAGACGGAAGATCGAGATTAAGAGAATTGAGAGATCCAGCAAGCGTCTTGTCACCTTCTCCAAACGGAAATTGGGTCTTTTTCGCAAAGCCGCTGAGCTTTCTCTGCTTTGTGAGTCTGAAATCGCCGTTGTCATCTTTTCTCAGCAGGGCAAGGTGTTCTCCTCCGGCTACCCCAACCCTGACTCCGTCATCCGCCGTTACCTCTCCTCCGGCAGGTTCTCTTCCTCCTCCGACCTCACGTCAGTAGTTGGGGAAGGAGAATCATCGGAGGTGTCGTCGCTGAGGTGGGAATATGAGGAGGCAATGAAGGTTTTGGAAGATGAGAAGAAATCAATGAACGCTGGGTCGGGTTCGGGAGACGGGTCATGGTGGAACCGCTCGGTTGGGGAGATGGGTTTGGAGGAAGTCCAGGAGTTCAAGGAAAGGCTTCAACGGTTAAGGCTCAATCTTGTTGCCGCGGCGGGGAAGAAGACTACTACTGCGGCGGCGGCTTCCCCGGCCACTTTGCCGCCGCCCACGGACGAGAAGATGACTACTACTATGACGGCTTCGGTGGTGACTTTGCTACCGCCTACGGAGGAGGAGGAATGTTTGCTCATGTCTATGTTGAACGACGATTTGGGTGTGGCTAAGGATGATCAAACATGGAATTGGGACTGGGATTCCTTGATTGACACTACAGGCTGGAATGGTTCTTCTTCTCTGGTTTGGAACAGTGATGTTAGCAAGGGTTTATATTAA	795	0.5182	MAPTPSSSTKPTRKQGKGRRKIEIKRIERSSKRLVTFSKRKLGLFRKAAELSLLCESEIAVVIFSQQGKVFSSGYPNPDSVIRRYLSSGRFSSSSDLTSVVGEGESSEVSSLRWEYEEAMKVLEDEKKSMNAGSGSGDGSWWNRSVGEMGLEEVQEFKERLQRLRLNLVAAAGKKTTTAAAASPATLPPPTDEKMTTTMTASVVTLLPPTEEEECLLMSMLNDDLGVAKDDQTWNWDWDSLIDTTGWNGSSSLVWNSDVSKGLY	264

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju13g0626	264	ProSiteProfiles	MADS-box domain profile.	17	77	IPR002100	GO:0003677\|GO:0046983
	Alju13g0626	264	MobiDBLite	consensus disorder prediction	1	21	-	-
	Alju13g0626	264	PRINTS	MADS domain signature	39	54	IPR002100	GO:0003677\|GO:0046983
	Alju13g0626	264	PRINTS	MADS domain signature	54	75	IPR002100	GO:0003677\|GO:0046983
	Alju13g0626	264	PRINTS	MADS domain signature	19	39	IPR002100	GO:0003677\|GO:0046983
	Alju13g0626	264	SUPERFAMILY	SRF-like	18	89	IPR036879	GO:0003677\|GO:0046983
	Alju13g0626	264	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	26	72	IPR002100	GO:0003677\|GO:0046983
	Alju13g0626	264	Coils	Coil	154	174	-	-
	Alju13g0626	264	PANTHER	MADS BOX PROTEIN	19	168	-	-
	Alju13g0626	264	SMART	madsneu2	17	76	IPR002100	GO:0003677\|GO:0046983
	Alju13g0626	264	Gene3D	-	30	90	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju13g0626	Alju-ChrAlju13	22949913	22950707	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju13g0626	14	165	Type I MADS-box Gene Family	AT5G60440	37.342	2.87e-25	99.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Alju13g0626		SRF-TF	1.2e-19	No_clan