Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0588 ATGGAGGCGACGGCGATCACCAATATGGCGGCGGCGGCGGCGGCTGCTCCACAGCCAATGGAGGGGCTTCACGAAGCTGGTCCTCCGCCATTTCTGACAAAAACATACGACATCGTCGACGACGTGTCCACCAACCACATAGTTTCGTGGAGCCGAGATGCAATGAAACTGTGTGAAACTGCAAAAACCCTATCTTCTGTCACGTTTCTTCAAGAAGCAGCTGAATGCATTGGATTTAGAAAGGTTGATCCAGATAGGTGGGAATTTGCCAATGAAGGGTTTCTGAGAGGACAAAAGCATCTTCTCAAGAACATAAGGAGAAAGAAAACAACTCAACTGCAACAACAACATCATAATCTCCATCACCATCAAGCTCTAGATTCATGCGTGGAAGTAGGCCGGTTCGGGCTGGATGGAGAGGTGAACCGGCTCCGGCGAGACAAGCAGGTGCTCATGCTGGAGCTGGTGAAACTCAGGCAACAACAACAGAATATAAAAACCTACCTTCAACAAATGGAAGGTAGACTCAAGAGAACCGAACAAAAGCAGCAACAAATGACGAATTTCTTAGCAAGAGCCATGCAGAACCCTAACTTTGTTCAGCAATTAGTTCGGAAGAAAGAATGGAAGAAGGAACTTGAAGAAGCAATCTCAAAGAAAAGAAGAAGAACCAAAGATCAAGGATCTAGTAGTCATAATTATAATAATAAAAATGTTGATGGGTTATTAGTAGGTCAATTAGATTGCTCAGATTTGGTTGAAGTACTTGAACCTAATAATAATATTGCTGCTGCTGCTGCTGGGGATTTGGATTTGATTGGCAAGTTAGAGGAAGAAGATGAACAACATAATGAGGTATTCCAAAGTATTAATAGAGAGAAAGAGATTATTAATGACGATGAAGTGTTTTGGCAAGACTTGTTGAACGAGGATGTTGAAGAAGTTATTCGAGCTTTCGAGGAGGATGACGATGATGACGACGGCGGTGGCGACGTGGAAGATGTTGATGTGTTGGCTGAACAACTTGGTTATTTAGCTTCTAGTAGCCCTTATCATCATCAGTAA 1065 0.4338 MEATAITNMAAAAAAAPQPMEGLHEAGPPPFLTKTYDIVDDVSTNHIVSWSRDAMKLCETAKTLSSVTFLQEAAECIGFRKVDPDRWEFANEGFLRGQKHLLKNIRRKKTTQLQQQHHNLHHHQALDSCVEVGRFGLDGEVNRLRRDKQVLMLELVKLRQQQQNIKTYLQQMEGRLKRTEQKQQQMTNFLARAMQNPNFVQQLVRKKEWKKELEEAISKKRRRTKDQGSSSHNYNNKNVDGLLVGQLDCSDLVEVLEPNNNIAAAAAGDLDLIGKLEEEDEQHNEVFQSINREKEIINDDEVFWQDLLNEDVEEVIRAFEEDDDDDDGGGDVEDVDVLAEQLGYLASSSPYHHQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0588 354 Gene3D - 24 109 IPR036388 -
Alju13g0588 354 Coils Coil 141 161 - -
Alju13g0588 354 SMART hsfneu3 27 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju13g0588 354 Coils Coil 206 226 - -
Alju13g0588 354 ProSitePatterns EF-hand calcium-binding domain. 325 337 IPR018247 -
Alju13g0588 354 Pfam HSF-type DNA-binding 31 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju13g0588 354 SUPERFAMILY "Winged helix" DNA-binding domain 27 108 IPR036390 -
Alju13g0588 354 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 52 IPR027725 -
Alju13g0588 354 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0588 Alju-ChrAlju13 22405411 22408252 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0588 9 349 HSF AT3G22830 45.855 9.93e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju13g0588 None None None