Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0586 ATGGAGGCGACTGCGACTGCGACCACCAATATGGCGGCGGCGGCTGCTGCTCCACAGCCAATGGAGGGGCTTCACGAAGCTGGTCCTCCGCCGTTTCTGACAAAAACATACGACATCGTCGACGACGTGTCCACCAACCACATAGTTTCGTGGAGCCGAGGTAACAATAGCTTCGTTGTCTGGGATCCACAGTCTTTCTCCCTGAGCCTCCTTCCCAGATTCTTCAAACACAGCAATTTCTCCAGCTTCGTCAGACAGCTTAATACCTATGGATTTAGAAAGGTTGATCCAGATAGGTGGGAATTTGCCAATGAAGGGTTTCTGAGAGGACAAAAGCATCTTCTCAAGAACATAAGGAGAAAGAAAACAACTCAACTGCAACAACAACATCATAATCTCCATCACCATCAAGCTCTAGATTCATGCGTGGAAGTAGGCCGGTTCGGCCTGGACGGAGAGGTGAACCGGCTCCGGCGAGACAAGCAGGTGCTCATGCTGGAGCTGGTGAAACTCAGGCAACAACAACAGAATACAAAAACCTACCTTCAACAAATGGAAGGTAGGCTCAAGAGAACCGAACAAAAGCAGCAACAAATGATGAATTTCTTAGCCAGAGCCATGCAGAACCCTAACTTTGTTCAGCAATTAGTTCGGAAGAAAGAATGGAAGAAGGAACTTGAAGAAGCAATCTCAAAGAAAAGAAGAAGAACCATAGATCAAGGACCTAGTAGTCATAATAATAATAATAAAAATGTTGATGGGTTATTAGTAGGTCAATTAGATTGCTCAGATTTGGTTGAAGTACTTGAACCTAATAATAATATTGCTGCTGCTGGGGATTTGGATTTGATTGGCAAGTTAGAGGAAGAAGATGAACAATATAAGGAGGTATTCCAAAGTATTAATAGAGAGAAAGAGATTATTAATGAAGATGAAGTGTTTTGGCAAGACTTGTTGAACGAGGATGTTGAAGAAGTTCTTCGAGGTTTCGAGGAGGAGGAGGACGACGACGACGGGGAAGATGTTGATGTATGTGTTGGCTGA 1044 0.4435 MEATATATTNMAAAAAAPQPMEGLHEAGPPPFLTKTYDIVDDVSTNHIVSWSRGNNSFVVWDPQSFSLSLLPRFFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKNIRRKKTTQLQQQHHNLHHHQALDSCVEVGRFGLDGEVNRLRRDKQVLMLELVKLRQQQQNTKTYLQQMEGRLKRTEQKQQQMMNFLARAMQNPNFVQQLVRKKEWKKELEEAISKKRRRTIDQGPSSHNNNNKNVDGLLVGQLDCSDLVEVLEPNNNIAAAGDLDLIGKLEEEDEQYKEVFQSINREKEIINEDEVFWQDLLNEDVEEVLRGFEEEEDDDDGEDVDVCVG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0586 347 Coils Coil 284 304 - -
Alju13g0586 347 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju13g0586 347 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 250 IPR027725 -
Alju13g0586 347 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju13g0586 347 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju13g0586 347 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju13g0586 347 Coils Coil 154 174 - -
Alju13g0586 347 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju13g0586 347 MobiDBLite consensus disorder prediction 1 28 - -
Alju13g0586 347 FunFam Heat shock transcription factor 1 25 122 - -
Alju13g0586 347 MobiDBLite consensus disorder prediction 233 252 - -
Alju13g0586 347 SUPERFAMILY "Winged helix" DNA-binding domain 28 121 IPR036390 -
Alju13g0586 347 Gene3D - 24 123 IPR036388 -
Alju13g0586 347 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0586 Alju-ChrAlju13 22384275 22386365 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0586 5 346 HSF AT3G22830 54.447 3.42e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju13g0586 HSF_DNA-bind 1.5e-31 CL0123