Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0548 ATGATGGTAGGACTGGAACTCATACCAGTGGGTACAATTCTGGCTGTGCTTACCAATCAGATTATAAAAACAGCTAATGCAGCATCTGAAGTTCTTGTCGAAAAAGAAATTTTCAAGGTTCTTTCAAAACACTTGTATGATATTGAACCCGTTCTAAAGGAATTACAGCTTCAAGAATTGAATGAGTCTCAAGCTGCAAGAATTGCTCTGGAGTCTCTTGAAGAAGATGTGAAGAGGGCGAACAAAGTGGTTGAGAAGTACAGGAACCGTGGTCGTTTTTACTTACTGGTTAATTGCAGGAGCATAGTTCATGAAGTTGAAGAGGTCACGAGAAGCATTGGAAAGTCCCTGTCTGTACTATCACTTGCAAATACTGAAGTTTTATCACGAATTTCTGATCAGGTCGATAGATTACAAAATGAGATGCAAAGGGTGGAGTTCGAGGTGTCACATTCTCAGCTTCAAATAGTGGAGAGGTTGGACCAGGGCCTTAGGGAGCAGAAACTAGACCAGGCTTTTGCAAATGACATGCTTGAAGAAATCGCAAGGGCAGTTGGAGTGCCAGTAGATCCTTCAGAGATAAGCAAAGAGCTAGCCAGCATTAGGAAAGAAAAAGAAGAAGCTGCTGACAGGAAAGAAAGGGCCGAGGTCTTCTTCTTGGAGCAGGTCATTGAATTACTATCCCGAGCTGATGCTGCAAGAGATTATGAAGAAGTTAAGAAACAATACTATGAAAGACTTCAGGTGATAGAAAGATACAATTCAAGGGAGAAATATATAGAGCCGCTTAATTCTTTCATTTGTTGTATAACCGGGACTGTTATGGCAGATCCCGTAAGCCTTTGCACTGGTACTACTTGTGAGAGATATGCCATTGAGTCTTGGTTTGACGCTGGTGAGAGAACTGACCCTGAAACCAAAGAAGCACTCGAAGATACTAAGTTGAGATCTAATGTTCCACTTAGACAATCCATAGAGGAATGGAGAGAACTTAATTACTGCCTTACAATCAGGTCTATCAGGGAAAACCTTTTATCAAATTCGAACTTATCTGTGCTAGAATCCTTGAGACAAGTGCAGGATCTCATAAGAGACAATTCTATAAACAAGGATTGGATTTCTATAGGAGGGCTTACCGACATTATTATCTCTATCCTTGGGAAAACTGTTAATGGAGAAGTGAAGATCAACATCTTGAGTACTTTGAATGATGCAGTAGAAGGGCATATGAGAAACAAGGAAAAAGTATCAGAATCTCATGGATGGGATCACATTATTTGCTGCTTGGGCAGTGACCCCAGAATTTCAAAAGCTGCAATTAACTTACTGTATGAGTTGCTGCAAGATCGAACAGGTTGGAATGTGTCTCTCTGCAGAAAACTCTCTCAGCATGACAGTGCAATTTCTTTCCTCGTTACCCTTCGTAAGGGTCCAGAAGAGGAGTCAGCTGAGATTGCAGAAAAGATTTTGATGGAGCTTTTTCACATAGATGAGGTCAACATTTCTAGTGCTGCCAAGTTTGGCTGGTATAAACCGCTTGTTGATCATATGGTTCAAGGAGTAGAATCTTCAAGGATATCAATGGCAAAAACCATTGTGAATATGGAGCTGGGTGATTCAAATTTGAACCTCCTTGGTGAAGAAGGAGTTATACCTCCTTTACTTGAAATGCTGTCGGGCAATATTGAATTAAAAGAAGCCTCATTATCTGCGCTGGTTAAACTGTCAGATTCCCGTGCCAATAAAAGGATTATAGCTGCGTCGGGGGGAGTTCCTCTCATTCTAGAACAAATTTTCTCTCCTTCCATGCGAACTCTCATTGCCACCAAATGCTCTGAAATCCTGGAGAAACTTTCTGCTGATGAAGATGGAATTGATTTCTTTGTTGACAGAGAAGGGAAACAACTTGAGCTAGATTCCATTATCATCAAATTACTTGCTCTTCAGCAGAGTCCCACCTTAGCCTACAATATCCGCAAGCCTTCTTTGCGTGCACTTCTCGGAATTTGCAAGTTTGAGACTGGTTTAGTCAAGAAGGCTGTCCTGGCTGCCAGGGGTGTATCTCTAATCCTCCCCCTCTTCGATGACTCTGATTCGGAAATCAGACAGACTGCCATAAACCTTCTCTTTCTTTTCTCCCAACATGAGCCAGAGGGAGTGGTTGAATACCTCTTCAGGCCAAGGAGGCTGGAGGCTTTGGTGGGATTTCTAGAGACTGATGACAATGGTGTTCAGATGGCTGCTGCTGGTTTAATAGCAAACCTACCGAAATCCGAAAAAGAGCTCACTATGAAGCTGATTGAATTGGGTGGACTTGATGCAATCATATGCATTTTGAAAACCGGAACAATGGAAGCTAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTTACAGATCCCACAAACATTGAGTCGCAGCGCGATTTGGTTAAGCGTGGGATATATCCTTTGCTCGTGGACTTTCTCAACACTGGTTCAATAACAGCAAAGGCTAGAGCAGCAGCCTTCATTGGAGATCTTTCTACAACCACCCCGATGCTCACACTCACAGCCAAATCAACTGGCTGCTGGTGTTTTAGACCATCAAGAGCTCACTTATGCCCAGCACACGGTAGTGTATGCAGTGTGAGCAACACATTTTGTCTCTTGGAAGCACAAGCTTTGCCTGGTTTAGTGAGTCTCTTACATGGGGAGGTCGATGTAACTGCTTATGAAGCAATACTGACTCTTTCAACATTGGTTTTGGAAGACTATCCTCAAAGGGGAGCTCATGTTTTGAACGAATCCAATGCTATAAAACCCCTTATGGATATTCTGACATGGGGTTCTGATTCTCTAAAGGCTGAGGCTCTAGGACTCTTGGAGAAGGTCTTTGTATCAAAGGAAATGGTGGAATTGCACGGCGCAACAGCTAGATCGCGCTTGGTTGGTTTGACGGGGATGAATATATATGGAGATGGCCATCTCAGAAGAAAAGCTGCCAAGGTATTATCATTGATCGAACGGTATTCAAGGTCGTCGTCATCTGCTGCTGTTTCTGGAGTTCTGGAGTGA 3054 0.4276 MMVGLELIPVGTILAVLTNQIIKTANAASEVLVEKEIFKVLSKHLYDIEPVLKELQLQELNESQAARIALESLEEDVKRANKVVEKYRNRGRFYLLVNCRSIVHEVEEVTRSIGKSLSVLSLANTEVLSRISDQVDRLQNEMQRVEFEVSHSQLQIVERLDQGLREQKLDQAFANDMLEEIARAVGVPVDPSEISKELASIRKEKEEAADRKERAEVFFLEQVIELLSRADAARDYEEVKKQYYERLQVIERYNSREKYIEPLNSFICCITGTVMADPVSLCTGTTCERYAIESWFDAGERTDPETKEALEDTKLRSNVPLRQSIEEWRELNYCLTIRSIRENLLSNSNLSVLESLRQVQDLIRDNSINKDWISIGGLTDIIISILGKTVNGEVKINILSTLNDAVEGHMRNKEKVSESHGWDHIICCLGSDPRISKAAINLLYELLQDRTGWNVSLCRKLSQHDSAISFLVTLRKGPEEESAEIAEKILMELFHIDEVNISSAAKFGWYKPLVDHMVQGVESSRISMAKTIVNMELGDSNLNLLGEEGVIPPLLEMLSGNIELKEASLSALVKLSDSRANKRIIAASGGVPLILEQIFSPSMRTLIATKCSEILEKLSADEDGIDFFVDREGKQLELDSIIIKLLALQQSPTLAYNIRKPSLRALLGICKFETGLVKKAVLAARGVSLILPLFDDSDSEIRQTAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLETDDNGVQMAAAGLIANLPKSEKELTMKLIELGGLDAIICILKTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSITAKARAAAFIGDLSTTTPMLTLTAKSTGCWCFRPSRAHLCPAHGSVCSVSNTFCLLEAQALPGLVSLLHGEVDVTAYEAILTLSTLVLEDYPQRGAHVLNESNAIKPLMDILTWGSDSLKAEALGLLEKVFVSKEMVELHGATARSRLVGLTGMNIYGDGHLRRKAAKVLSLIERYSRSSSSAAVSGVLE 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0548 1017 SUPERFAMILY RING/U-box 249 331 - -
Alju13g0548 1017 SUPERFAMILY ARM repeat 650 1002 IPR016024 -
Alju13g0548 1017 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 336 IPR013083 -
Alju13g0548 1017 Coils Coil 128 155 - -
Alju13g0548 1017 Gene3D - 8 124 IPR036537 GO:0007166
Alju13g0548 1017 Coils Coil 63 90 - -
Alju13g0548 1017 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 1008 - -
Alju13g0548 1017 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Alju13g0548 1017 Pfam MCAfunc domain 25 155 IPR045766 -
Alju13g0548 1017 Gene3D - 337 536 IPR011989 -
Alju13g0548 1017 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Alju13g0548 1017 SMART arm_5 578 620 IPR000225 GO:0005515
Alju13g0548 1017 SMART arm_5 716 757 IPR000225 GO:0005515
Alju13g0548 1017 SMART arm_5 759 799 IPR000225 GO:0005515
Alju13g0548 1017 SMART arm_5 875 915 IPR000225 GO:0005515
Alju13g0548 1017 SMART arm_5 919 959 IPR000225 GO:0005515
Alju13g0548 1017 SMART arm_5 674 714 IPR000225 GO:0005515
Alju13g0548 1017 SMART arm_5 538 577 IPR000225 GO:0005515
Alju13g0548 1017 SMART arm_5 802 842 IPR000225 GO:0005515
Alju13g0548 1017 Gene3D - 861 1010 IPR011989 -
Alju13g0548 1017 Gene3D - 537 856 IPR011989 -
Alju13g0548 1017 SUPERFAMILY ARM repeat 336 647 IPR016024 -
Alju13g0548 1017 CDD MLKL_NTD 11 146 - -
Alju13g0548 1017 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 590 IPR000225 GO:0005515
Alju13g0548 1017 Pfam U-box domain 265 330 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0548 Alju-ChrAlju13 21082910 21086709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0548 265 971 U-box Gene Family AT1G76390 27.009 2.49e-42 165