Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0495 ATGTTTAAAACGGTAGTATCTGGACTTTCAATTTTGTTCCTCCTCCAATGTGTATCTGCAACAGATAATGAATTTCCCAGATGTAACTGTGATGATGAGGCCAGCTTGTGGACTATTGAGAGTATTCTGGAGTGCCAGAGAGTCAGTGATTTGTTGATTGCTGTGGCCTACTTCTCCATACCTATTGAGTTGCTTTGTTTTATCAGTTGTGCGAATGTCCCATTCAAATGGGTTCTTGTTCAGTTCATTGCCTTCATTGTACTATGTGGACTGACACATTTGCTGAATGCATGGACTTATGGTCCTCACTCTTTCCAAGTGATGGTGGCACTTACAGTATTCAAAACTCTTACGGCTTTGGTATCGTGTGCCACTGCTATTACTCTCATGACTCTCATTCCTTTGCTTCTTAAAGTGAAGGTCAGAGAATTAATGCTGAGGAAAAAGACCTCTGAACTTGGGCGAGAGGTTGGTATTATTATGAGGCAGAAGGAAGCTGCAAAACATGTGAGGATGCTCACTCGAGAGATTCGCAAGTCACTTGATAGGCATAATATTTTGTACACTACCTTGGTGGAGCTGTCTGAAACACTTCGTTTGCAAAATTGTGCAGTCTGGATGCCTAATTTTGATAAAACAGAGATGAACCTCACTCATGAATTGAATGGGAGGAATCTTAATCTTTCTATACCCATTACGGATCCAGATGTTGTGAGAATCAAGGCAATTGATGGAGTAAATATTCTTAGCCCTGCCTCAGCACTTGCTGCTGCTAGTAGTGGAAGTTCTTCTGAGGCAGGACCGGTGGCTGCAATTCGGATGCCAATGCTTCAGATTTGCAATTTCAAAGGTGGAACACCTGAGGTAAAGCAGGCATGTTATGCAATATTGGTTCTGGTTCTTCCTGGTGGAGAGCCAAGATCTTGGAGCAATCAGGAGCTGGAAATAGTTAAAACGGTTGCTGATCAGGTTGCTGTAGCCCTGTCTCATGCTGCAATTCTTGAAGAGTCCCAACTCATGAGAGAAAAGTTGGAGGGGCAAAATCGAATTCTGCAACAGGCTCAAAGGAATGCTGTGATGGCGAGTCAGGCAAGAAACTTATCTCAGAAGGTCATGAGTGATGGAATGAGAAGACCAATGCACTCAATTTTGGGTTTGCTTTCAATTATACAAGATGAAAATTTGAAAAGCGAACAAAAACTCATTGTGGATTCGATGTTGAGAACCAGCAATGTCCTATCAAACTGGATAAATGATGCCATGAACATTTCAGCCAAGGATGATGGAGGATTTCCATTGGAGATGAGATCTTTTGGGTTACATGCCATGATAAAAGAAGCAGCATGCCTTGCCAAGTGTCTTTGCGTTTACAGGGGCTTTGGTTTTAAAATTGAGTGTGAGAAGTCTTTGCCTAACGACGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTCTACATATGGTTGGGAACTTATTGGATGGTAATCACAGGGGAGGGATTCTTGTACTTCGTGTTCTTGCAGAAAGAGGAAGTCAGGAAAGAAATGACCATGGGTGGACAACCTGGAGACCAAGCTCATCTAGTGGGGATGTACATATTAGATTTGAGATAGGGATCACTAGAGGCAACTATGAGTTGGAGAGTTCACTTTCTTTAGGAGTTCATGGTAGGAAATATTCTAGTTGTAGAGATGAAGTCAGATTGAGCTTCAGCATTTGCAAGAGGATAGTTCAGTTGATGCAAGGGAACATATGTCTATTTCAATTTTCATCTCTGAGCCTGGTGAATCCTCTGAGCGCACAGCTTCTAATTCTCTGCTCTAATTCTCTGCTCAGAGGTCTGCAAGTCTTGTTGGCTGACAATGATGATGTAAATAGAGCTGTGACACAAAAGTTGCTTCAGAAGCTGGGTTGCGTCGTAACTTCGGTTTCTTCAGGATTTGAATGCCTTGCTGTCATTGCACCTGCTGGATCTTCTATTCAAGTCATTCTTTTGGATCTTCATATGCCTGAGTTAGATGGCTTTGAAGTAGCCACAAGGATTCGGAAATTTAGAAGCCAAAGTTGGCCAATGATTGTTGCCTTGACTGCAAGTGCTGATGAAGATTTGCGTGAAAGGTGTATGCAAATCGGTATCAGTGGAATTATAAGAAAACCTGTTATGTTGCAGGAAATTGCCAGAGAACTTCGGAGGATCCTGATGCATGCACGGAAATGA 2220 0.4239 MFKTVVSGLSILFLLQCVSATDNEFPRCNCDDEASLWTIESILECQRVSDLLIAVAYFSIPIELLCFISCANVPFKWVLVQFIAFIVLCGLTHLLNAWTYGPHSFQVMVALTVFKTLTALVSCATAITLMTLIPLLLKVKVRELMLRKKTSELGREVGIIMRQKEAAKHVRMLTREIRKSLDRHNILYTTLVELSETLRLQNCAVWMPNFDKTEMNLTHELNGRNLNLSIPITDPDVVRIKAIDGVNILSPASALAAASSGSSSEAGPVAAIRMPMLQICNFKGGTPEVKQACYAILVLVLPGGEPRSWSNQELEIVKTVADQVAVALSHAAILEESQLMREKLEGQNRILQQAQRNAVMASQARNLSQKVMSDGMRRPMHSILGLLSIIQDENLKSEQKLIVDSMLRTSNVLSNWINDAMNISAKDDGGFPLEMRSFGLHAMIKEAACLAKCLCVYRGFGFKIECEKSLPNDVMGDERRVFQVILHMVGNLLDGNHRGGILVLRVLAERGSQERNDHGWTTWRPSSSSGDVHIRFEIGITRGNYELESSLSLGVHGRKYSSCRDEVRLSFSICKRIVQLMQGNICLFQFSSLSLVNPLSAQLLILCSNSLLRGLQVLLADNDDVNRAVTQKLLQKLGCVVTSVSSGFECLAVIAPAGSSIQVILLDLHMPELDGFEVATRIRKFRSQSWPMIVALTASADEDLRERCMQIGISGIIRKPVMLQEIARELRRILMHARK 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0495 739 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 350 429 IPR036097 GO:0000155|GO:0007165
Alju13g0495 739 SMART gaf_1 182 338 IPR003018 GO:0005515
Alju13g0495 739 CDD HATPase_ETR2_ERS2-EIN4-like 470 585 - -
Alju13g0495 739 Gene3D - 615 739 - -
Alju13g0495 739 Gene3D - 160 329 IPR029016 -
Alju13g0495 739 Pfam GAF domain 182 328 IPR003018 GO:0005515
Alju13g0495 739 SUPERFAMILY CheY-like 613 734 IPR011006 -
Alju13g0495 739 CDD REC_ETR-like 615 730 - -
Alju13g0495 739 PIRSF Ethylen_sen_hybr_HK 1 739 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Alju13g0495 739 SUPERFAMILY GAF domain-like 186 331 - -
Alju13g0495 739 Coils Coil 334 357 - -
Alju13g0495 739 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 737 - -
Alju13g0495 739 FunFam Ethylene receptor 613 737 - -
Alju13g0495 739 Gene3D - 330 427 - -
Alju13g0495 739 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 431 587 IPR036890 -
Alju13g0495 739 ProSiteProfiles Response regulatory domain profile. 616 734 IPR001789 GO:0000160
Alju13g0495 739 Pfam Response regulator receiver domain 617 729 IPR001789 GO:0000160
Alju13g0495 739 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Alju13g0495 739 Gene3D - 428 590 IPR036890 -
Alju13g0495 739 FunFam Ethylene receptor 4 331 425 - -
Alju13g0495 739 SMART REC_2 615 730 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0495 Alju-ChrAlju13 19450249 19453337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0495 22 737 Miscellaneous Gene Families AT3G04580 56.107 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju13g0495 GAF 3.5e-11 CL0161