Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0490 ATGGATTTCTTGCGCGAGTCGATCAAGAAGGTACGGTCACGATTCGATTTCGAGGTTCCTGAACCGGCAGTTCGCCTAGCCCTAACGGAGTGTCGGTTCGACGAGGACGCTGCGGTAGAGTTTCTCAACAACAATCCCGGGTTTCTGGCCCGGCCCGTCACGGTGGTTCGGGCTGTCACTAGCACTGGCTCGAGGGTTTTGGCACCGACGCCGGTAAAGCAAGAGGGGTTTGACGACTCGCAAATGTCCGATGAAATTAGTCTGAAGAGCAATGTGAAAGAGGAACCCGTTGATTTGGCGATTGAGGATCGAAGCCCAGCGAATGCGAAAAATGGTTCCGATAATTCTCATGAGGTGGCACAACCGATCGAGGAGTTGAATGTGAGGAAGGAATCGGAGGAAGATGATGTTTCTAAGTCATTGCCGTCCCAAACCCAGACGCAAGAGTCTACTGATAATCGGAAATCTTCATGGGAAGCTGGATATGAAGAGTTCCTTAAGGCTTCAAATACAAAAGTTATTTCAAAGGAAGAATATCTTAAGTCCACTGTGGAACAACAGCAATCAGTTCAGGCTTCTGTGAATAAGATCTCGGAGAAGAAACAGGTGACTACTCCTGATAGCGATGAAGTAAAAATCGTCAATGAAGTTGGTTTCTTTCAATGTTTTCAGAAATCTTCCCAGGTTAAAAAGAAAAACGTTGAACTTGAACTTCCTAGACCTCCAAACGTGGAGGATGGGGAATTTCCAGAATATCCAGACTGGTTTTTAGCGGGAAGGACAATAATCACTGCACTTTCAACTACTAAAGGGAGGAAATTAGTGGACAATGAGATTGTACATTTCGATTTTCGGTCTGCATTTGCCAAACGCGACTCGAAATGGATTCTTCGCATTTCAACCAAGCGTTCTGGAGAGGTTGGACGGGTTAATATGGAATGGGCTAATGAGGTTGTCCCACTTGTTCGTTCTGCAAAGGTCAAGATTATAGGCCGATGCGTAGCTGCACCACCTGTCTTAACAATGATGCAAGATGTCATGTTGTGTGTAAGCTTTTACATCCACCACAGCGTATTCACTTCAGAAGTCAATACTTCATGGAGGCTTGATGGCTCTACTTACATTGATCCTGCTGTTTATCCTCTTCCCACATTGTTCAAATTGATAGAAATGAAGCCATATCAGAATGCTGCTTTTACGCCAGAGGAACTTAATTCTAGGAAACGTTTGTTCAGTATCACGGGTAATAAAGATGAAGCTGCGTCAGATTTGCCTGTCTTGAAACGGAGAAAGGGTTGTTCTTCTGATCAAGATGATGAACAGGCTGTGTCACAGTCATCTTTGGATAAGCTTGTTGGAGCAGCTGAAGTCTACAACTTGGAGGAGATGGAAGGGCCATGCACACTGATGTGTGTTCTAAAGCCTTACCAGAAACAAGCGCTGTATTGGATGTCAGAACTAGAAAAAGGAACTAATGCTCAGAACGCTGAAAATACTGTTCATCCTTGCTGGGCAGCCTATTGTATAAATGATGAGAGGGTTCCCACTATTTATGTAAACAACTTCACTGGGGAAGCAACAACAAAGCTTCCACCTGCATTTCGATTGCCAAGAGGAGGGATTCTTGCAGATGCTATGGGACTTGGGAAGACTGTCATGACTATTGCACTAATCCTTGCAAGACAAGGGAGAGGGGATAATGTTGGTCTTTCAAAGAAGAGGAACCAAGTTTCTCATACTGACCCCACATTCAGAGTCGATGGCGGCACTCTTGTTGTCTGTCCCATGGCATTGCTAGGTCAATGGAAGGACGAGCTTGAAAGCCATTCCAAGCCAGGAAGCTTATCCATTTTTGTTCACTACGGTGGGGATAGAACCAATGATCTTCGGGTGATCTCAGGGCATGATGTTGTTTTAACAACTTATCGTGTCCTTGGAGATGCATATAAAACTTATAAAGAGAACAGCATCTACCATAAGGTCAACTGGCATAGGGTGGTCCTAGACGAAGCTCACTCCATTAAAGCCTATAAATCACATGCTGCACTAGCTGCTTTTACACTGACCTCACACTGCCGTTGGTGTCTTACTGGAACCCCTCTACAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGCTTCTTGCATGTTGAACCATGGGGCAATTTTGCATGGTTTAATAAATTGGTTCAACGACCTTATGAGAATGGTGATCCTCGAGGCTTGAAATTAGTCAAGGCCATTTTGAAGCCGTTGATGTTAAGAAGAACAAAGGAAACAAAGGATAAGTGCGGAAGGCCCATACTTGTTCTTCCACCGATTGACATTCAATTGATTGAGTGTGAACAGTCAGCAGCTGAAGCTGAATTGTACAACGCTCTCTTTAGGAAATCTAAACATCAATTCGACCAGTATGTTGGACAAGGAAAAGTTCTCAGCAACTATGCTAACATTCTTGAGTTATTATTGCGGCTGAGACAATGTTGTAACCATCCGTTTCTGATCACAAGCCGAAGTGACTCAAAGAAACCTGTGGACTTTGACATACTCGCGAAAAGACTACTCGAGTTCAATGCTAATTCTACGAGTCAGTGTGCATATGTTACAGAGGCCATAGAGGCTCTTCGCAAGGGTGAAAAACTAGAATGCCCAATATGCTTAGAATCTGCAGATGATCCTGTGCTCACTCCATGTGCACACAGAATGTGTAGGGAGTGCTTGCTTTCTAGCTGGAGTACCCAAATCAGTGGTCCTTGCCCTCTCTGCCGTCATAAGATAAACATAACCGATCTAATCAATTGTCCATTTCAGAATCAGTTTGTGGTTTCTGATGTTGAGAAGGACTGGAAGGAGTCTACCAAGGTTTCAAAGCTTCTGGAAACCTTGGAGCACATTGAGAGATATCGCCCCGCTGAAAAAAGCATTGTGTTCAGCCAGTGGACGACCTTTTTGGACCTCCTGGAGATTGCTTTGAAGAAGAAAGGAATTGGGTATTTTAGATTTGATGGGAAACTGCAACAGAAGAATAGGGAAAGAGTTTTGAAGGAGTTTAATGAATCCAGAGGGGAAAGGGTTTTGTTGATGTCACTTAAAGCTGGTGGTGTAGGCTTGAACTTAACTGCAGCCTCGAATGTTTTCATGATGGATCCATGGTGGAATCCTGCGGTTGAAGAGCAAGCAATTATGAGAATCCATCGTATAGGACAAAAGCGAACAGTTCAGGTTAGAAGATTCATTGTCAAGGATACGGTGGAAGAGGGGTTGCAACAAGTGCAGGCCAAGAAGCAGAAGATGATATCTGGAGCCCTCACAGAGGATGAGGTTCGGTCAGGTAGGCTTGAAGACCTCATGATGCTGTTCAGTTGA 3366 0.4439 MDFLRESIKKVRSRFDFEVPEPAVRLALTECRFDEDAAVEFLNNNPGFLARPVTVVRAVTSTGSRVLAPTPVKQEGFDDSQMSDEISLKSNVKEEPVDLAIEDRSPANAKNGSDNSHEVAQPIEELNVRKESEEDDVSKSLPSQTQTQESTDNRKSSWEAGYEEFLKASNTKVISKEEYLKSTVEQQQSVQASVNKISEKKQVTTPDSDEVKIVNEVGFFQCFQKSSQVKKKNVELELPRPPNVEDGEFPEYPDWFLAGRTIITALSTTKGRKLVDNEIVHFDFRSAFAKRDSKWILRISTKRSGEVGRVNMEWANEVVPLVRSAKVKIIGRCVAAPPVLTMMQDVMLCVSFYIHHSVFTSEVNTSWRLDGSTYIDPAVYPLPTLFKLIEMKPYQNAAFTPEELNSRKRLFSITGNKDEAASDLPVLKRRKGCSSDQDDEQAVSQSSLDKLVGAAEVYNLEEMEGPCTLMCVLKPYQKQALYWMSELEKGTNAQNAENTVHPCWAAYCINDERVPTIYVNNFTGEATTKLPPAFRLPRGGILADAMGLGKTVMTIALILARQGRGDNVGLSKKRNQVSHTDPTFRVDGGTLVVCPMALLGQWKDELESHSKPGSLSIFVHYGGDRTNDLRVISGHDVVLTTYRVLGDAYKTYKENSIYHKVNWHRVVLDEAHSIKAYKSHAALAAFTLTSHCRWCLTGTPLQNSLEDLFSLLCFLHVEPWGNFAWFNKLVQRPYENGDPRGLKLVKAILKPLMLRRTKETKDKCGRPILVLPPIDIQLIECEQSAAEAELYNALFRKSKHQFDQYVGQGKVLSNYANILELLLRLRQCCNHPFLITSRSDSKKPVDFDILAKRLLEFNANSTSQCAYVTEAIEALRKGEKLECPICLESADDPVLTPCAHRMCRECLLSSWSTQISGPCPLCRHKINITDLINCPFQNQFVVSDVEKDWKESTKVSKLLETLEHIERYRPAEKSIVFSQWTTFLDLLEIALKKKGIGYFRFDGKLQQKNRERVLKEFNESRGERVLLMSLKAGGVGLNLTAASNVFMMDPWWNPAVEEQAIMRIHRIGQKRTVQVRRFIVKDTVEEGLQQVQAKKQKMISGALTEDEVRSGRLEDLMMLFS 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0490 1121 SMART HIRAN_2 256 354 IPR014905 GO:0003676|GO:0008270|GO:0016818
Alju13g0490 1121 CDD SF2_C_SNF 952 1079 - -
Alju13g0490 1121 ProSiteProfiles Zinc finger RING-type profile. 883 923 IPR001841 -
Alju13g0490 1121 Pfam SNF2-related domain 476 834 IPR000330 GO:0005524|GO:0140658
Alju13g0490 1121 SUPERFAMILY RING/U-box 878 932 - -
Alju13g0490 1121 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 212 1120 - -
Alju13g0490 1121 SMART ring_2 883 922 IPR001841 -
Alju13g0490 1121 Pfam Zinc finger, C3HC4 type (RING finger) 883 922 IPR018957 GO:0046872
Alju13g0490 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 769 1114 IPR027417 -
Alju13g0490 1121 MobiDBLite consensus disorder prediction 123 138 - -
Alju13g0490 1121 ProSitePatterns Zinc finger RING-type signature. 898 907 IPR017907 -
Alju13g0490 1121 CDD RING-HC 881 922 - -
Alju13g0490 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 876 932 IPR013083 -
Alju13g0490 1121 CDD DEXDc_SHPRH-like 473 756 - -
Alju13g0490 1121 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 957 1117 IPR001650 -
Alju13g0490 1121 Gene3D - 528 757 IPR038718 -
Alju13g0490 1121 SMART helicmild6 985 1068 IPR001650 -
Alju13g0490 1121 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 531 718 IPR014001 -
Alju13g0490 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 756 IPR027417 -
Alju13g0490 1121 MobiDBLite consensus disorder prediction 91 157 - -
Alju13g0490 1121 SMART ultradead3 469 731 IPR014001 -
Alju13g0490 1121 FunFam DNA repair protein RAD5B 528 757 - -
Alju13g0490 1121 Gene3D - 772 1120 IPR027417 -
Alju13g0490 1121 Pfam HIRAN domain 263 348 IPR014905 GO:0003676|GO:0008270|GO:0016818
Alju13g0490 1121 MobiDBLite consensus disorder prediction 139 155 - -
Alju13g0490 1121 Pfam Helicase conserved C-terminal domain 956 1068 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0490 Alju-ChrAlju13 19185370 19192097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0490 92 1120 RAD5 or RAD16-like Gene Family AT5G43530 58.428 0.0 1211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju13g0490 SNF2_N 3e-80 CL0023