Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0473 ATGGCTTCATCCTTGAAGGAACTCCTAGCAGAAGAAGGGTTCAAGGGAAGTAGAAGAATCGCAAGATCCCGATCTTCCCTGCAGTCTAATCCTGAAAAGTTGCCTCATTACTCCATCAGGGACCAGGAAAGTAGGCTATCTGTGTCAGAGGACAGAATTAGAGTGGAGAGAACGAAATCTTACGTCTCACAGTATCGGATTGGGGATGACTTTTTAAATAGAGATACTGCTCAAAGCAGGAGACCAAGGGACAATCTTGCTGAAGGAGAGAATTTGGACGAAGGATTGAAGAATGAAATTGTTGAGAAATCTTCCATCAATACGAAGTTAAGTAAAAAAATTGATAGCAAAACACCAGGACATAAACATAGAAATGAGATAATCGAGGTGGGTGAGCATGAAGATGACGAAGTTAAAGATGTTTATGCCAGTGAATTGTTAATTGCAAATAGAGGGAAAGAAGAGTATTTGAATGACTTTAGGAATAGGGATAAGTGGCCCAGGATGCTACTCAAGGATTCAAAGTTGGATAAGAGGCATAGCAGCAGTTCTAGTACACATAAGGTTGGACAGTTGAGTGGAAGTATAAAGAAGAATATAAAGCGGCAGGAGAGATCATACAGTCAATCAACCAGTGAAAGCTTTGAAAATAGATATGATAAAAATCACGGGCATGCTTTGCAGACACCAGCTGATGTAGCTCTCGATGAAGTTGCCGTACAAGCAGTTGTTTCTATTCTAAATGGATATATAAAACGCTTTCTAAAAGATGAAGATTTTCGGACCACATTGCGTCACAATTGTTTTTCCTCCTTGAATTTCATTGAACTGGAAGATGAGAACAGTACTGAGATCAAAGTCATAAGAAGCCTTGAACAAGCAATTGATACAATAGAACAATCTGCTGAGGAATCTGTATCTGAAAAAGAATTGAAAAGAACCTCTTTGCAGCTAAGCATTATTACAGGTCTAAGCTTAAATGAACTGAAGTATGGCTTTACATGTGGGATACCTAATTATAAGTTGTCTGCCTGTGCTCATCTTTACCTCAGTGTCGTCTATAAGATACAGAGAAAAGAAAAGGTATCGGCAAAGCATCTTTTGCAAGTGTTTTGTGATTCACCTTCTCAGGCGCGGACAACATTGCTGCCTGAATTGTGGGAGTACTTATTTTCTCCACATCTTTCTCATTTGAGGGCATGGTACAAAAGGGAAGTTCATATGCTACTGGATATGCCAAGCAGAACAAGAAAAGTAAAGAATCTTGAAAAGGTGTATAATGAGCATTTGGATTCTGGGACATATTCATTTGCTATATACTACAAGGACTGGCTCACTGAAGGAGCAGAAGCTCCATCAGTTCCTTCTGTCACCATTCCATCAATATCAGCTTCAGAAAGTCACCATGGAAGTCCCCTTGGTCAATCTTCTGAATTAGCTTCGTCTGTTGATTCATTCTCACCTCAGACAATGGTTAGCAAAAAACTGTATGATTCTGTCTTTGGTAGCTCGAGTAAAGCTGTAATTGAAGAAGAGAAAGATAATGCCATAGAAGATAACTTACACAACCACATGAGACACGCATGCAGTTCATCTATTGCTGAACAAAAATTAACATTTGTCTCTGAAGTAGTTAAATATACAGATGAAGATACTGAAGAAGATTCTAAGAAGATGACGCTTGCTATTGAGCTACATACTGAGCTCATTTGTCCTTTGACTGGAACTTTATTTGAGGAACCAACTACCCTTGAGACTGGTCAAACCTATGAACGAGCAGCCATCAAAGCCTGGTTCGAAAAGGGAAACAGAACTTGCCCAGTGTCTGGAAATAGTTTAGATTGTGTTGGCATGCCATTAACTAACCTTGTTTTGAAGCGTTTGATTGATAATTGGAAGTCAGAACAATTTAATCGCATACTGGATTTTGCTTCTCAAATTGCAGACAATGAAAGCCAAGAGCTGAAACATGATGAGGCTGCTGTTTTTAATTTAGAGAGTCTCTTCACTTCATTGAATGGATCAAACAAAAGAAATTATGTCAAACAACTCATCTCTATAGGGCTTCTGTCATTTCTTTTTAGGAGGCTTGAATTGGGAAATGTGGAAGAGAAAACACATGCGTTGACACTTTTGCTAAATTGCAGTGAAGCAGATTCTAGTTGCATATATCAGATCGCAAGGAACATTGACAAAAAATTTCTTCTAGAGCTTCTTTGCAGCGACGATGTTGCCCCAAGAACAACTGCAATTTCATTGCTTGCTGAATTATTTTCTCTTAAAAGAAATGATGCTATTTCCTTCTTAAGTGACTTTGCTGGTCCAGATGTATTGAACACAATGAATGTTCTACTTTTGTTTCTTAAGAATTCTTCTCTGCATCAAAAACCCCTTGTTGCAGTTCTTCTGTTACACCTCGATTTACTGGTCAACTTCTCTCCGAAGACTGAGTCTCAAACGCATAGCATATACAGAGAGGAGGCAGTGAATGTCATTGCAGTTGCTCTTGATGCCAGCTTACACGATGACAAAGTCCAAGAAAAGTGTTGCAGGGCACTGCTTATTTTGAAAGGACTTTTTGCTACCAAAGGAAAGAAACAAGCCAAGAGTGACATTTTAAAGCAAAATGAAGATGAAACTGATAGTTCAGAAGTCAATTTTTGTGAGCATGAAGAAGAGGGTTTAATATCATTGGAAGATGAAGAAGAAAAGAACAAAGAGTGGCTGATGAACTTGTTAGAATTGTTGATTGGTGATGGAGAAAGCCCATTTTTGAAGAACATTTCAAGATGTTTAGCCTCTAGATACCTAGATTTGGTGAAGATGTGCTTATTAACAGTTACATGGCTTAGCTCCAGACTTTCTGTACTAAGTAATTCTGGTTCACCCCTTCCTGCGTTCCCAGCCATCATCTATCAGATGAAAGGAATACTGCAGAGTGGAGATCTTGAGCTCAAGACTCTTGCTTCTTTGTCCTTGTTTTATTTCAGTAAGATACCAGAAAGCAGAGCCCTTTTGATGACTATGGCAGAAGATATTGTTGCTCCTCTTCATAGACTTATTGATGTAACATGGACTGCAAAGCAGCTTCTTGTCATGTTAGGGAAGGAATTGTAA 3117 0.3885 MASSLKELLAEEGFKGSRRIARSRSSLQSNPEKLPHYSIRDQESRLSVSEDRIRVERTKSYVSQYRIGDDFLNRDTAQSRRPRDNLAEGENLDEGLKNEIVEKSSINTKLSKKIDSKTPGHKHRNEIIEVGEHEDDEVKDVYASELLIANRGKEEYLNDFRNRDKWPRMLLKDSKLDKRHSSSSSTHKVGQLSGSIKKNIKRQERSYSQSTSESFENRYDKNHGHALQTPADVALDEVAVQAVVSILNGYIKRFLKDEDFRTTLRHNCFSSLNFIELEDENSTEIKVIRSLEQAIDTIEQSAEESVSEKELKRTSLQLSIITGLSLNELKYGFTCGIPNYKLSACAHLYLSVVYKIQRKEKVSAKHLLQVFCDSPSQARTTLLPELWEYLFSPHLSHLRAWYKREVHMLLDMPSRTRKVKNLEKVYNEHLDSGTYSFAIYYKDWLTEGAEAPSVPSVTIPSISASESHHGSPLGQSSELASSVDSFSPQTMVSKKLYDSVFGSSSKAVIEEEKDNAIEDNLHNHMRHACSSSIAEQKLTFVSEVVKYTDEDTEEDSKKMTLAIELHTELICPLTGTLFEEPTTLETGQTYERAAIKAWFEKGNRTCPVSGNSLDCVGMPLTNLVLKRLIDNWKSEQFNRILDFASQIADNESQELKHDEAAVFNLESLFTSLNGSNKRNYVKQLISIGLLSFLFRRLELGNVEEKTHALTLLLNCSEADSSCIYQIARNIDKKFLLELLCSDDVAPRTTAISLLAELFSLKRNDAISFLSDFAGPDVLNTMNVLLLFLKNSSLHQKPLVAVLLLHLDLLVNFSPKTESQTHSIYREEAVNVIAVALDASLHDDKVQEKCCRALLILKGLFATKGKKQAKSDILKQNEDETDSSEVNFCEHEEEGLISLEDEEEKNKEWLMNLLELLIGDGESPFLKNISRCLASRYLDLVKMCLLTVTWLSSRLSVLSNSGSPLPAFPAIIYQMKGILQSGDLELKTLASLSLFYFSKIPESRALLMTMAEDIVAPLHRLIDVTWTAKQLLVMLGKEL 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0473 1038 SUPERFAMILY ARM repeat 677 1022 IPR016024 -
Alju13g0473 1038 Pfam U-box domain 568 636 IPR003613 GO:0004842|GO:0016567
Alju13g0473 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 544 640 IPR013083 -
Alju13g0473 1038 MobiDBLite consensus disorder prediction 17 36 - -
Alju13g0473 1038 MobiDBLite consensus disorder prediction 21 35 - -
Alju13g0473 1038 MobiDBLite consensus disorder prediction 73 92 - -
Alju13g0473 1038 Gene3D - 641 879 IPR011989 -
Alju13g0473 1038 SUPERFAMILY RING/U-box 563 635 - -
Alju13g0473 1038 Coils Coil 288 308 - -
Alju13g0473 1038 SMART Ubox_2 568 632 IPR003613 GO:0004842|GO:0016567
Alju13g0473 1038 CDD RING-Ubox_PUB 568 625 IPR045210 -
Alju13g0473 1038 MobiDBLite consensus disorder prediction 175 216 - -
Alju13g0473 1038 PANTHER OS04G0584500 PROTEIN 565 1031 - -
Alju13g0473 1038 MobiDBLite consensus disorder prediction 460 480 - -
Alju13g0473 1038 ProSiteProfiles U-box domain profile. 564 639 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0473 Alju-ChrAlju13 18859343 18865779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0473 544 916 U-box Gene Family AT1G23030 24.711 2.43e-13 72.4