Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0396 ATGGCAGATCTTGCTAGCTATGTGAATTCTGAGCGTGACATTGAGCAAAGTAGAAAAAAATATTCTGTGTCAGTGCTTGAGCCAGAAGAGGAAGAAAGTAGTGAAGATATTGACGTGGCACTTGTAGCTTTAAAAAAAGGCTCTCAATTACTAAAGTATAATCGAAAAGGGAAGCCAAAATTCCGTCCCTTCAGACTCTCACCTGATGCTACAACATTGATTTGGATTTCTCATGGACGGGAAAAATATATAAGGTTGTCTTCTGTATCACGTATCATCCCTGGACAAAGAACTGCTGTATTTAGAAGGCACTTTCGCCCGGAAAAGGATTATCTATCATTTTCACTTGTTTACAAAAACGGAGAACGGACACTTGATCTGATTTGCAAGGACAAAGCTGAGGTGGAGATATGGTTTGGTGGCCTAAAGGCATTAATTTCTCCTGGAAAACACGCCCTACGTTCCGAAAGTAACTTATATGATGTACAAGATGGTGTTGACTTCTTCCCAATTAGTCGTCCTTTTGGTGCAACATTAGAGTTTGCTTCTAGCATTGCACGTGGTAGGGATTCCATAGATTCTCCATTGAATTGGGCAACCTCAGATGTGGCATCAGAAGGTCCAAATATGCAACCAAGGACAAGTGCTTCAGATGGCTTCCGTGTAAGTGTGTCAAGCACACCTAGTTGTTCAAGCATAGGATCGGGGCCAGATGACATAGAGTCACTAGGTGATGTGTATATATGGGGAGAGGTTTGGAGTGATGGGGCTTCACCTGATTGTTGGATCACTGATGTGCTGGTTCCTAAGCCATTAGAATCAAATGTTGTTCTTGATGTTCAACAAATTGCATCTGGTATGCATCACATTGCTCTAGTTACGAGGCAGGGAGAGGTGTTTTCTTGGGGTGAGGAATCTGGGGGAAGACTTGGTCACGGGATTGATAAAGATTTCTGTCACCCACATTTGATTGAGTTTCTCTCTATTCAAAATGTTGAGTTTGTTGCATGTGGGGAGTATCATACGTGTGCTATTTCTACGTGGGGTGATTTATTCACATGGGGAGATGGTGCTCATAATGCTGGCCTTCTTGGTCATGGCAGTGATGTTAGTCATTGGATCCCAAAGAGAGTCACCGGCCCTTTAGAACGTCTACAAGTTGTATCAATTGCATGTGGTACATGGCATTCTGCACTAGCAACCTCTAATGGCAAATTGTTTACCTTTGGAGATGGAACATTTGGTGTCTTAGGCCATGGAGATAGGAGCAGTGTGTCATATCCAAGGGAGGTACAATCATTGAGTGGACTCAAGACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCTATTGTAGAGGTTATGGGTCATCAAGGTACTAATATTTCTTCCCGAAAGCTTTTCACTTGGGGTGACGGTGACAAGTATCGATTGGGTCATGGAAACAAGGAAACCTACCTTCAACCCACTTGTGTCTCTGCACTAATTGATTATAATTTCCTCCAGATAGCATGTGGCCACACTATGACTGTTGCCTTAGATACATCAGGTTTTGTATTTACCATGGGCGGCACTGCATATGGCCAGTTAGGAAATGCTTTGTCTGATGGAAAAACACCTACAAAGGTTCAAGAAAAGTTGGTTGGTGAATATGTTGAGGAAATATCATGTGGAGCAAATCATGTTGCCGTCTTAACATCAAGGAGCGAATTATATACATGGGGCAAGGGAGCCAATGGAAGATTGGGGCACGGAGACACCCAAGATCGGAAATCTCCAACACTAGTTGAAAGCTTGAAAGATAGGCATATCAGAAATGTATCATGTGGCTCAAATTTTACATCTTGCATATGCATCCATAAATGGGTCTCTGGACCTGATCAATCTATTTGCTCTGGTTGTCGCCAAGCATTTGGCTTTACTAGAAAAAGGCATAATTGTTATAATTGTGGCTTGGTGCATTGCCATGCTTGTAGCTCCAAGAAGGCTTTAAGAGCCACACTGGCTCCAACGCCAGGAAAACAACATCGTGTGTGTGATGCTTGTTATAATAAGCTTAAAGCAGCTGAGACTGCTAGTGCTTCTTCTGCTTTTAGTAGGAAACTGACTCCCCCTTGTCAATCCATAGATGGCAGGGAAAGATTAGATCGTGGAGAAGTAAGGTCTTCAAGAATTCTCGTGTCTTCCATCACTGAGCCGGTAAAATTCCTTGAGATTTGGGGAAATAAGCCAGAATCTAAACATGATTTTTCTTCCCTTACCCGAAGTTCTCAATCAAGTTCACAATTCAAGCATGCTGCATTTCCAAGTTCATTGAAGCCCATTCATAATGCTTTTAGGTCTTCTAGTCCACCTCCAACACCACCAGCCAATTCAAGATCTGCATCACCATATACAAGAAGACCGAGTCCTCCACGTTCTGCCACCCCTGGATTTTCTAGAAGCATGATTGAAAATTGGAGCAAGTCGAATGAGCTTATGAACCAAGAACTCTCAAAATTACAAAATCAAATTAGAAGTTTGAAACAGAAGAATGATATGCAAGATATGGAGATACAGAAGTTGAAGAAACATGTCCAGGAAGCCACCTTGTTGACTGGAGAGAAATCCTCTAAGCTTAAGCTAGCTAGGGAATTTATTAAGAGCATGACAGATCAGTTGAAAGATGTGACAGAGAATTTGCCACCAGACAATCCAAACAGTGAGACCTTGAGAAATATCCATGCTCAAGGTGAAGATTTCTTGAGAGAAAATCTAGAATCTGAAGCATCATCTTCCATACTTTCGAACATAGAGTCTAGTCAGGAAATTGGACTTGATATACCATCTTCAGATATTGATGGTTCTAAATTGCAAGAACAGAAACTCGAAGAAACTATTGATCCTGGAGTGGAACCATCTCAACATTCAGGAAATTCTCTTCAAGAAAGTAGTAGATCATCTTTATCTATTATAGAGGTAGCAACTCCACCGCAAAGCTTAGAAAATGGTTCGCAAACACCAGACTCTATGCAACCAGGTAGAGAAACAGAACCACAAGTCGTTGAACAATTTGAATCTGGTGTTTTTGTGACGCTAGTGGTAAGGCCAAATGGATCAAAAGTTTTCAAACGAGTTAGATTCAGTAAAAGAAGGTTCGACGCACAGCAAGCAGAAGAATGGTGGAATACAAATAAAGATAGGGTGTTTAAAACGTTTAGTTCACCAACAACAAATCCTGCAGCTATTGGGTCATCAGCTGCGTCTAACACTCAACCCTTAGCTGAAGACAACACTTAA 3282 0.4168 MADLASYVNSERDIEQSRKKYSVSVLEPEEEESSEDIDVALVALKKGSQLLKYNRKGKPKFRPFRLSPDATTLIWISHGREKYIRLSSVSRIIPGQRTAVFRRHFRPEKDYLSFSLVYKNGERTLDLICKDKAEVEIWFGGLKALISPGKHALRSESNLYDVQDGVDFFPISRPFGATLEFASSIARGRDSIDSPLNWATSDVASEGPNMQPRTSASDGFRVSVSSTPSCSSIGSGPDDIESLGDVYIWGEVWSDGASPDCWITDVLVPKPLESNVVLDVQQIASGMHHIALVTRQGEVFSWGEESGGRLGHGIDKDFCHPHLIEFLSIQNVEFVACGEYHTCAISTWGDLFTWGDGAHNAGLLGHGSDVSHWIPKRVTGPLERLQVVSIACGTWHSALATSNGKLFTFGDGTFGVLGHGDRSSVSYPREVQSLSGLKTIKVACGVWHTAAIVEVMGHQGTNISSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIDYNFLQIACGHTMTVALDTSGFVFTMGGTAYGQLGNALSDGKTPTKVQEKLVGEYVEEISCGANHVAVLTSRSELYTWGKGANGRLGHGDTQDRKSPTLVESLKDRHIRNVSCGSNFTSCICIHKWVSGPDQSICSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRATLAPTPGKQHRVCDACYNKLKAAETASASSAFSRKLTPPCQSIDGRERLDRGEVRSSRILVSSITEPVKFLEIWGNKPESKHDFSSLTRSSQSSSQFKHAAFPSSLKPIHNAFRSSSPPPTPPANSRSASPYTRRPSPPRSATPGFSRSMIENWSKSNELMNQELSKLQNQIRSLKQKNDMQDMEIQKLKKHVQEATLLTGEKSSKLKLAREFIKSMTDQLKDVTENLPPDNPNSETLRNIHAQGEDFLRENLESEASSSILSNIESSQEIGLDIPSSDIDGSKLQEQKLEETIDPGVEPSQHSGNSLQESSRSSLSIIEVATPPQSLENGSQTPDSMQPGRETEPQVVEQFESGVFVTLVVRPNGSKVFKRVRFSKRRFDAQQAEEWWNTNKDRVFKTFSSPTTNPAAIGSSAASNTQPLAEDNT 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0396 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 695 IPR013083 -
Alju13g0396 1093 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 570 621 IPR000408 -
Alju13g0396 1093 Pfam FYVE zinc finger 622 688 IPR000306 GO:0046872
Alju13g0396 1093 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 626 688 IPR017455 -
Alju13g0396 1093 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 82 894 - -
Alju13g0396 1093 MobiDBLite consensus disorder prediction 961 1012 - -
Alju13g0396 1093 PRINTS Chromosome condensation regulator RCC1 signature 390 406 IPR000408 -
Alju13g0396 1093 PRINTS Chromosome condensation regulator RCC1 signature 565 586 IPR000408 -
Alju13g0396 1093 PRINTS Chromosome condensation regulator RCC1 signature 349 365 IPR000408 -
Alju13g0396 1093 PRINTS Chromosome condensation regulator RCC1 signature 406 420 IPR000408 -
Alju13g0396 1093 PRINTS Chromosome condensation regulator RCC1 signature 507 525 IPR000408 -
Alju13g0396 1093 PRINTS Chromosome condensation regulator RCC1 signature 279 292 IPR000408 -
Alju13g0396 1093 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 403 IPR000408 -
Alju13g0396 1093 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 518 569 IPR000408 -
Alju13g0396 1093 Pfam Transcription factor regulating root and shoot growth via Pin3 1013 1066 IPR013591 -
Alju13g0396 1093 MobiDBLite consensus disorder prediction 1 33 - -
Alju13g0396 1093 SMART fyve_4 620 689 IPR000306 GO:0046872
Alju13g0396 1093 SUPERFAMILY RCC1/BLIP-II 243 623 IPR009091 -
Alju13g0396 1093 MobiDBLite consensus disorder prediction 748 767 - -
Alju13g0396 1093 MobiDBLite consensus disorder prediction 1068 1093 - -
Alju13g0396 1093 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 404 455 IPR000408 -
Alju13g0396 1093 SUPERFAMILY FYVE/PHD zinc finger 622 691 IPR011011 -
Alju13g0396 1093 Pfam Transcription factor BRX N-terminal domain 869 903 IPR027988 -
Alju13g0396 1093 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 442 452 IPR000408 -
Alju13g0396 1093 MobiDBLite consensus disorder prediction 202 221 - -
Alju13g0396 1093 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 283 293 IPR000408 -
Alju13g0396 1093 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 466 517 IPR000408 -
Alju13g0396 1093 FunFam PH, RCC1 and FYVE domains-containing protein 1 215 457 - -
Alju13g0396 1093 Pfam Pleckstrin homology domain 43 146 IPR001849 -
Alju13g0396 1093 SUPERFAMILY PH domain-like 40 146 - -
Alju13g0396 1093 MobiDBLite consensus disorder prediction 794 815 - -
Alju13g0396 1093 Gene3D - 36 154 IPR011993 -
Alju13g0396 1093 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 348 IPR000408 -
Alju13g0396 1093 Coils Coil 818 859 - -
Alju13g0396 1093 MobiDBLite consensus disorder prediction 752 767 - -
Alju13g0396 1093 MobiDBLite consensus disorder prediction 12 27 - -
Alju13g0396 1093 MobiDBLite consensus disorder prediction 966 1008 - -
Alju13g0396 1093 MobiDBLite consensus disorder prediction 776 815 - -
Alju13g0396 1093 CDD PH_PLC_plant-like 36 147 - -
Alju13g0396 1093 CDD FYVE_like_SF 632 684 - -
Alju13g0396 1093 ProSiteProfiles BRX domain profile. 1013 1068 IPR013591 -
Alju13g0396 1093 Pfam Regulator of chromosome condensation (RCC1) repeat 518 566 IPR000408 -
Alju13g0396 1093 Pfam Regulator of chromosome condensation (RCC1) repeat 349 399 IPR000408 -
Alju13g0396 1093 Pfam Regulator of chromosome condensation (RCC1) repeat 571 618 IPR000408 -
Alju13g0396 1093 Pfam Regulator of chromosome condensation (RCC1) repeat 403 452 IPR000408 -
Alju13g0396 1093 Pfam Regulator of chromosome condensation (RCC1) repeat 468 514 IPR000408 -
Alju13g0396 1093 Pfam Regulator of chromosome condensation (RCC1) repeat 297 345 IPR000408 -
Alju13g0396 1093 Gene3D - 204 458 IPR009091 -
Alju13g0396 1093 Gene3D - 459 635 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0396 Alju-ChrAlju13 14153045 14164836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0396 1016 1086 Major Intrinsic Protein MIP AT1G31880 35.211 2.62e-08 55.5