Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0379 ATGCAAGACGCCAAGAAAATAAAAGAAACTATAGAAGAAGCAGGTTTTAAAGTTCACGAGCTTTCAGAGCAAGACATATCAGTATGTAAAGTCAGGATTAAAGGAATGGCATGCACAAGCTGCTCTGAATCTGTTGAGTGTGCTCTCCAAATGGTCGATGGTGTGAAAAAAGCAGCAGCAGGCCTGGCTTTAGGAGAAGCAAAAGTGCATTTTGACCCTAATCTCACTGATGTAAACAAAAAAATTGAAGAAGTAGAAGATACTGGCTTTAGAGTATATCTCGTTAGCTCGGGGACTAATGTGAATAAAGTGCATCTAAGACTTGAAGGACTTGATTCTCCAGATGATGTCAATATTGTAACGTCATCTCTTGAATTAGCTCAAGGTGTAAATCATGTTGAGATGGACTTGACAGAACGTAAAGTTACAGTTACCTATGATCCAGACAGACAGAGAGAAACAGGGAGCATGGATGAAATTCATATGTATAAGATCCAATTTTTGTTTAGTTGCTTATTTTCGGTTCCCGTGTTCTTATTTGCCATGGTACTTCCCATGCTTCCTCCGTGTGGTAACTGGTTGAACTATAAGATCCACAATATGTTAACTATTGGAATGTTTCTAAGATGGATCCTTAGCACGCCTGTTCAGTTCATAGTTGGCAAAAGGTTCTATGTTGGATCATATCATACACTGAGGCGAAGATATGCTAACATGGATGTGCTAGTTGCACTTGGCACCAATGCTGCGTATTTTTACTCTATTTATATTCTTATTAAAGCGCTCACTTCAGTAACATTTCAAGGACAAGATTTCTTTGAGACCCGTTCCATGTTAATATCCTTTATTCTCTTGGGAAAATATTTGGAGGTTGTGGCTAAAGGGAAAACATCATATGCTTTAGCAAAGTTGACACAACTTGTTCCTGATAAAGTCTGTTTATTAGCCCTAGATGCTGAGGGAAATGTGATCTCTGAGACAGTCGACACTCAACTTATACTAAGGAACAACATAATTAAAATTGTTCCTGGGGCCAAAATTCCTGTCGATGGGGGTGTAGGAAATGAGGTTATTGGTGGGACCGTGAATGAGAACGGCTACTTAGTGGTTAGGGCCACACATGTTGGAACAGAAACTGCACTTTCTCAAATTGTTCAACTTGTAGAAGCTGCTCAACTTGCTAAAGCACCGATCCAAAAACTTGCTGATCATATTTCAAAATTTTTTGTCCCAATAGTGATTGTTGGAGCATTCATAACCTGGCTGGGATGGTTTATTCCTGGTGAAGCTGGCATTTACCCTAAGGTTCTAGTTGTTGCCTGCCCATGTGCTCTGGGTCTAGCAACACCAACAGCAGTCATGGTTGCTTCAGGTATTGGTACTTCTCAAGGGGTACTCATCAAGGGATGCACTGGAAAAGGCACACAAGTTATCCACAGCTCTTGTGCTGCATTATTATCTTAA 1464 0.4023 MQDAKKIKETIEEAGFKVHELSEQDISVCKVRIKGMACTSCSESVECALQMVDGVKKAAAGLALGEAKVHFDPNLTDVNKKIEEVEDTGFRVYLVSSGTNVNKVHLRLEGLDSPDDVNIVTSSLELAQGVNHVEMDLTERKVTVTYDPDRQRETGSMDEIHMYKIQFLFSCLFSVPVFLFAMVLPMLPPCGNWLNYKIHNMLTIGMFLRWILSTPVQFIVGKRFYVGSYHTLRRRYANMDVLVALGTNAAYFYSIYILIKALTSVTFQGQDFFETRSMLISFILLGKYLEVVAKGKTSYALAKLTQLVPDKVCLLALDAEGNVISETVDTQLILRNNIIKIVPGAKIPVDGGVGNEVIGGTVNENGYLVVRATHVGTETALSQIVQLVEAAQLAKAPIQKLADHISKFFVPIVIVGAFITWLGWFIPGEAGIYPKVLVVACPCALGLATPTAVMVASGIGTSQGVLIKGCTGKGTQVIHSSCAALLS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0379 487 CDD HMA 30 93 IPR006121 GO:0046872
Alju13g0379 487 SUPERFAMILY HMA, heavy metal-associated domain 98 150 IPR036163 GO:0046872
Alju13g0379 487 CDD HMA 106 154 IPR006121 GO:0046872
Alju13g0379 487 Gene3D - 354 468 - -
Alju13g0379 487 Gene3D - 98 165 - -
Alju13g0379 487 SUPERFAMILY HMA, heavy metal-associated domain 25 97 IPR036163 GO:0046872
Alju13g0379 487 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 150 353 - -
Alju13g0379 487 ProSitePatterns Heavy-metal-associated domain. 33 62 IPR017969 GO:0046872
Alju13g0379 487 Gene3D - 27 97 - -
Alju13g0379 487 Pfam E1-E2 ATPase 346 458 - -
Alju13g0379 487 Gene3D - 267 353 - -
Alju13g0379 487 ProSiteProfiles Heavy-metal-associated domain profile. 27 93 IPR006121 GO:0046872
Alju13g0379 487 Pfam Heavy-metal-associated domain 31 90 IPR006121 GO:0046872
Alju13g0379 487 FunFam ATPase copper transporting beta 22 97 - -
Alju13g0379 487 PRINTS Copper-transporting ATPase 1 signature 126 147 - -
Alju13g0379 487 PRINTS Copper-transporting ATPase 1 signature 28 53 - -
Alju13g0379 487 PRINTS Copper-transporting ATPase 1 signature 83 103 - -
Alju13g0379 487 PRINTS Copper-transporting ATPase 1 signature 54 77 - -
Alju13g0379 487 SUPERFAMILY Calcium ATPase, transduction domain A 327 388 IPR008250 -
Alju13g0379 487 SUPERFAMILY Calcium ATPase, transmembrane domain M 274 468 IPR023298 -
Alju13g0379 487 ProSiteProfiles Heavy-metal-associated domain profile. 102 172 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0379 Alju-ChrAlju13 12390435 12396443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0379 3 479 Primary Pumps ATPases AT1G63440 47.748 2.51e-169 501