LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju13g0344	ATGCGTCGGTGGCTTTGTTGTACTCGTCATGTGGAAGACTCATACCCACCACATGAAAATGAGCGCCTGAAAAGCCCTTATGGAGATGATGACCAAAGAGACTCAAGAATGTCAGCTCCCGTCAAACATGACCCACCAAAGTCTGCACCACCACCTATTGAAGTGCCAGCATTATCTTTAGAGGAGCTAAAGGAAAAGACTGACAATTTTGGATCAAAGGCTTTGATTGGTGAAGGATCTTATGGAAGAGTGTATTACGCAACCTTAAATAATGGAAAAGCTGTTGCTGTGAAAAAGCTTGATGTTTCGTCTGAAGATGAATCAAATGTTGAGTTTTTGACCCAGGTTTCCATGGTCTCAACATTGAGGCATGATAATTTTGTTGAGTTGCATGGTTACTGTGTTGAGGGAAATATGCGTGTGCTGGCATATGAGTTTGCAACTATGGGCTCACTTCATGACATATTGCATGGTAGAAAGGGAGTTCAGGGGGCACAACCTGGACCAACTCTTGACTGGATGCAGCGAGTTAGAATTGCAGTAGATGCAGCGAAAGGATTGGAATATTTGCATGAGAAAGTTCAACCATCGATTATACATAGAGATATCAGATCAAGCAATGTGCTTATTTTTGAAGATTACAAGGCAAAGATAGCTGATTTCAACCTTTCCAATCAGGCCCCTGACATGGCTGCACGCCTTCATTCTACTCGAGTTTTGGGAACATTTGGTTATCATGCCCCAGAGTATGCAATGACTGGCCAATTGACACAAAAAAGTGATGTCTACAGTTTTGGTGTAGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGATCATACCATGCCTCGTGGACAGCAAAGTCTTGTTACATGGGCTACGCCAAGACTGAGTGAAGATAAAGTTAAACAATGCGTGGACCCAAAATTGAAGGGAGAATATCCCCCCAAAGGGGTAGCTAAGCTCGCGGCCGTTGCAGCACTGTGTGTGCAGTACGAGTCCGAGTTTAGGCCAAATATGAGCATTGTTGTTAAAGCCCTTCAACCACTTCTGAAGACTGCTGCTCCTACCCAAGAATCTTGA	1086	0.4365	MRRWLCCTRHVEDSYPPHENERLKSPYGDDDQRDSRMSAPVKHDPPKSAPPPIEVPALSLEELKEKTDNFGSKALIGEGSYGRVYYATLNNGKAVAVKKLDVSSEDESNVEFLTQVSMVSTLRHDNFVELHGYCVEGNMRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWMQRVRIAVDAAKGLEYLHEKVQPSIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLKTAAPTQES	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju13g0344	361	MobiDBLite	consensus disorder prediction	14	53	-	-
	Alju13g0344	361	ProSiteProfiles	Protein kinase domain profile.	70	352	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju13g0344	361	PIRSF	ILK	32	360	-	-
	Alju13g0344	361	MobiDBLite	consensus disorder prediction	14	41	-	-
	Alju13g0344	361	Pfam	Protein tyrosine and serine/threonine kinase	75	348	IPR001245	GO:0004672\|GO:0006468
	Alju13g0344	361	Gene3D	Transferase(Phosphotransferase) domain 1	148	360	-	-
	Alju13g0344	361	FunFam	PTI1-like tyrosine-protein kinase 3	148	358	-	-
	Alju13g0344	361	PANTHER	PTO-INTERACTING PROTEIN 1-LIKE	4	356	-	-
	Alju13g0344	361	ProSitePatterns	Protein kinases ATP-binding region signature.	76	99	IPR017441	GO:0005524
	Alju13g0344	361	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	198	210	IPR008266	GO:0004672\|GO:0006468
	Alju13g0344	361	FunFam	PTI1-like tyrosine-protein kinase 3	32	146	-	-
	Alju13g0344	361	SMART	tyrkin_6	70	348	IPR020635	GO:0004713\|GO:0006468
	Alju13g0344	361	SUPERFAMILY	Protein kinase-like (PK-like)	47	348	IPR011009	-
	Alju13g0344	361	Gene3D	Phosphorylase Kinase; domain 1	46	146	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju13g0344	Alju-ChrAlju13	11589269	11604362	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju13g0344	48	349	Receptor kinase-like Gene Family	AT4G02010	49.180	3.74e-91	286

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIII	Alju13g0344		PK_Tyr_Ser-Thr	5.4e-48	CL0016