Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0251 ATGAGTACTGGCTTGTTCCCCTTCAACGGCGGCGGAGGAGGAGGCGAAGCCGCCTTGGATGCAGCCGCACGAGGAGGAGGAGGTGGTGGGGCAAACTTGGACCCAGCTGCACGTGGAGGTGGAGGTGGCGCTGGTGGAGGTTTCGGAACTACTTGTACAAAAACTAACCAAACTCAGAGAAGGTTCCTAGGTATGAGAGAACCCAAATCAAGGGACTTCCACAAGCAGCAACGGCTTGCAGAGGAAGATGAGATTAAACTTTTGGACTCATGGATTCAATCCCAGAAACCGGACTCTGGATCCAACCCCATGTCATTCCCCCCTTTATCTTCTAAAGACCCTGTAGGTCATATTGATGGTAATACATTTTCGCGTTATGTGGGTGTTACGAGGTTTGACCAGTTGCCAATTTCCAAGAAAACCAAGGATGGTTTGTTAGAAGCTAAGTATGTTAACATGACTGATATACAGAGGGCTTCTTTGCCCCATGCTCTTTGTGGTCGAGATATTTTGGGTGCATCAAAAACTGGGTCAGGAAAAACCTTGGCTTTCATTATTCCGGTCCTGGAAAAGTTATATAGAGATAAATGGGGGCCGGAAGATGGGGTAGGCAGCATAATCATATCCCCTACAAGAGAATTAGCTGGTCAGCTGTTTGATGTTTTAAAAAGTGTAGGTAAGCACCATAATTTTAGTGCTGGCCTGCTGATTGGGGGTCGCAAGGAAGTTAATGTGGAGAAAGAGCACGTAAATGATCTAAATATTTTGATTTGCACACCTGGTCGCCTTCTACAACACATGGATGAAACTCCAAACTTTGATTGTTCACAGATTCAGATGTTGGTGCTAGATGAGGCAGATCGGATTCTTGACACTGGATTTAAGAAGGAACTAAATGCGATAATATCACAGCTTCCAAAGCATAGACAAACCCTGCTCTTCTCGGCAACTCAAACGAAGTCTGTTGAAGTTCTTGCAAGACTAAGTTTAAAGGATCCAGAATATCTGAGTGTCCATCAAGAGTCTGTGACTGCCACCCCTACTCTCTTGAGACAGCTTGTGATGATTGTTCCTCTGGACCAAAAGTTAGATATGTTATGGAGTTTCTTGAAGTCCCATCTTAACTCCAAAATACTTGTCTTTCTCTCTAGCTGTAAACAGGTAAAATTTGTTTTTGAAGCATTTAAGAAACTTCGTCCTGGCATACCCTTGAAATGCCTTCATGGGAGGATGAAGCAGGAAAGAAGGATGGCAATATATTCTGAGTTTTGTGAGATGCGCTCGGTACTCTTCTCAACTGATGTGACTGCAAGAGGGCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTTGATTGTCCTGAAAATGTAGCATCTTACATACACAGAGTTGGGAGAACTGCTCGCTACAAGTCTGGGGGTAGATCAGTTCTATTTTTGATGCCTTCAGAGATGAAAATGCTTGAAAAGTTAGAAGCAGCTAAAGTTCCAGTGCATCTTAATAAGCCTAGGAAGGAACGACTGCAACCAGTATCTGGTTTGTTAGCAGCATTACTGGTCAAGTACCCAGATCTCCAGCAATGGGCAAAAAGGGCCTTCATTACATATTTGAGATCCATTCATATCCAGAAGGATAGAGAAATCTTTGATATTATGAAATTGCCAATTGATGAATATTCTGCATCATTAGGCTTGCCCATGACTCCCAAAACTCGATTTCTTAGCCAAAAAGATAAATCTAAAGCTGTGTCAACAAAACCCATTTTAGCTGAACCACAAGAATCCCACAGAGAAATTGCATTGGAGGTTCCGAGAGAGGAACTGGACGTTAATGGTCCTGAGGAAGAGGAAGAGGAAAAGGGTCTTCTTTTGCCGGATAGTTCCTCTGATGAAGGGGAAGGGAGAGCATCTGAAATTGTGGATGTCATCCCACCAACCCGTGTTTCCAAGAAAAAGAAGCTCAAGATCAACATACATAGACCAATGGGGACTAGGGTTGTATTTGATGATGAAGGTAATGCTCTGCCTCCACTAGCAAGAATTGCTGATACACAGACCGTCAAGGAAACATTGGTGCTTGATCTAGAACAAAAATCTGAATATTATAGAAAGATGCGTGAGGAGTTGAAGAAGGTTGACAAGGAAGACAAGCTTGTGCAACAACAGCGTCGAAGAGAAAAGAGAATCAAGCAAAAGATGAAGTTGAAGGAAATAAGTGCTGGAGAGGAGGATGATGACATCATTTCTGGGTCAGAAGGAGATGATGAAGATGAAGTTGCAGACAGAAGGCATAAAAAGAGTAAGATATATTTAGATAGTGATAGTGATGATGACACTAAAGGAACTGAAGTCACAGGAGGGAAAGAGGGTATTATTTCTCAGCCTGTTACTTTGGAGGAGCAAGAAGCATTGGCTTTGAAGTTGTTAAATTCCATGCACTCGTAG 2448 0.4297 MSTGLFPFNGGGGGGEAALDAAARGGGGGGANLDPAARGGGGGAGGGFGTTCTKTNQTQRRFLGMREPKSRDFHKQQRLAEEDEIKLLDSWIQSQKPDSGSNPMSFPPLSSKDPVGHIDGNTFSRYVGVTRFDQLPISKKTKDGLLEAKYVNMTDIQRASLPHALCGRDILGASKTGSGKTLAFIIPVLEKLYRDKWGPEDGVGSIIISPTRELAGQLFDVLKSVGKHHNFSAGLLIGGRKEVNVEKEHVNDLNILICTPGRLLQHMDETPNFDCSQIQMLVLDEADRILDTGFKKELNAIISQLPKHRQTLLFSATQTKSVEVLARLSLKDPEYLSVHQESVTATPTLLRQLVMIVPLDQKLDMLWSFLKSHLNSKILVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGRMKQERRMAIYSEFCEMRSVLFSTDVTARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGRSVLFLMPSEMKMLEKLEAAKVPVHLNKPRKERLQPVSGLLAALLVKYPDLQQWAKRAFITYLRSIHIQKDREIFDIMKLPIDEYSASLGLPMTPKTRFLSQKDKSKAVSTKPILAEPQESHREIALEVPREELDVNGPEEEEEEKGLLLPDSSSDEGEGRASEIVDVIPPTRVSKKKKLKINIHRPMGTRVVFDDEGNALPPLARIADTQTVKETLVLDLEQKSEYYRKMREELKKVDKEDKLVQQQRRREKRIKQKMKLKEISAGEEDDDIISGSEGDDEDEVADRRHKKSKIYLDSDSDDDTKGTEVTGGKEGIISQPVTLEEQEALALKLLNSMHS 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0251 815 MobiDBLite consensus disorder prediction 33 54 - -
Alju13g0251 815 Pfam DEAD/DEAH box helicase 154 323 IPR011545 GO:0003676|GO:0005524
Alju13g0251 815 CDD SF2_C_DEAD 350 481 - -
Alju13g0251 815 Pfam Domain of unknown function (DUF4217) 516 571 IPR025313 -
Alju13g0251 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 492 IPR027417 -
Alju13g0251 815 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 282 290 IPR000629 -
Alju13g0251 815 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 336 IPR014001 -
Alju13g0251 815 MobiDBLite consensus disorder prediction 605 640 - -
Alju13g0251 815 Coils Coil 696 723 - -
Alju13g0251 815 MobiDBLite consensus disorder prediction 94 108 - -
Alju13g0251 815 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 158 IPR014014 GO:0003724
Alju13g0251 815 MobiDBLite consensus disorder prediction 94 113 - -
Alju13g0251 815 MobiDBLite consensus disorder prediction 757 785 - -
Alju13g0251 815 SMART helicmild6 389 472 IPR001650 -
Alju13g0251 815 Gene3D - 348 589 IPR027417 -
Alju13g0251 815 MobiDBLite consensus disorder prediction 718 793 - -
Alju13g0251 815 CDD DEADc_DDX10 141 339 - -
Alju13g0251 815 Gene3D - 121 342 IPR027417 -
Alju13g0251 815 PANTHER RNA HELICASE 105 617 - -
Alju13g0251 815 Pfam Helicase conserved C-terminal domain 362 471 IPR001650 -
Alju13g0251 815 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 520 IPR001650 -
Alju13g0251 815 MobiDBLite consensus disorder prediction 623 638 - -
Alju13g0251 815 SMART ultradead3 149 353 IPR014001 -
Alju13g0251 815 SMART DUF4217_3 511 574 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0251 Alju-ChrAlju13 5706343 5717219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0251 129 493 Eukaryotic Initiation Factors Gene Family AT3G19760 28.338 6.28e-38 145