Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0225 ATGGAAGATGATGGGACGATATGCAACACACGGCTGAGTCTAGGGCTTGGAATAGGAGGCTATGTGATGCCAATGAAGAAGCAGAAGTTTGAAGAAGGCATTATTAATAAAGAATTTATCAGTTTGAAGACCAGATCAATCGATGAAGAAGAAGATGATGATGAGGATGAAAAGAGCGATCATAGGAATAGTTGCAGAAAGAAACTGAGACTCACCAAGGAACAATCTGCCATGCTTGAAGATAGCTTCAAGCTCCATAGCTCTCTCAACCCACTCCAGAAACAAGAACTTGCCCAGAGATTGAATTTGAAGCCCAGACAGATTGAAGTTTGGTTTCAAAACAGAAGAGCAAGGAAGAAGTTGAAGCAAACGGAATTAGACTGTGAGTTGCTGAGAAAATGCTGCGAAAACCTAAGAAAGGAGAACAGAAGGTTGAAGAAAGAAGTAGAGGAACTACGAGGCGGCCTGAAAGTTGAAGCGCCGTCGTCGTCTTCGTCGTCACCACCACCGTTAATATTAGGAAGCAGTAATAACGGTATTCAACTGTCAAGAGCAGCAGCCCCACTGGCTCTATGTTCAATTCTTCACGTGAGAAGCCATTAA 603 0.4312 MEDDGTICNTRLSLGLGIGGYVMPMKKQKFEEGIINKEFISLKTRSIDEEEDDDEDEKSDHRNSCRKKLRLTKEQSAMLEDSFKLHSSLNPLQKQELAQRLNLKPRQIEVWFQNRRARKKLKQTELDCELLRKCCENLRKENRRLKKEVEELRGGLKVEAPSSSSSSPPPLILGSSNNGIQLSRAAAPLALCSILHVRSH 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0225 200 CDD homeodomain 66 123 IPR001356 GO:0003677
Alju13g0225 200 SMART halz 122 166 IPR003106 GO:0006355|GO:0043565
Alju13g0225 200 SUPERFAMILY Homeodomain-like 57 123 IPR009057 -
Alju13g0225 200 Pfam Homeobox associated leucine zipper 122 155 IPR003106 GO:0006355|GO:0043565
Alju13g0225 200 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 44 163 - -
Alju13g0225 200 Gene3D - 47 126 - -
Alju13g0225 200 SMART HOX_1 64 126 IPR001356 GO:0003677
Alju13g0225 200 Coils Coil 121 155 - -
Alju13g0225 200 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Alju13g0225 200 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Alju13g0225 200 Pfam Homeodomain 66 120 IPR001356 GO:0003677
Alju13g0225 200 MobiDBLite consensus disorder prediction 48 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0225 Alju-ChrAlju13 4902543 4904192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g0225 52 161 Homeobox Transcription Factor Family AT4G37790 67.273 8.86e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju13g0225 Homeodomain 3.7e-16 CL0123