Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g2080 ATGAGTACTCGAGCGCTCAGGGGTGCTGCTATTAGTTGTTACCGGCGGAGAAAGACTGCTCTGGACTTGGACCTTAACCAGGCCCCGCCTGGTGAAAGTCGGGAGCTGGAGGGACTTTCAACTCAGCTGGAGCCTCAAGGAGTTCAAGCTATTCTTCAACCGCAGGTTGGACAACCTGCGATGATTGATGTTGAGGCCATTGATGATGATGTTATTGAATCTACTCCCCGGGCCTTTGCTGAGGCTAAAAACAATTCAAGGAGAAGCCGAAGCAGGGCTATAGTTGATGTGGATTTAGAAGATCGGACTAGGGTAACTAAGAATAATCGCAACAAACGCAGAAGAGATTATCCAAGCCAAACAATTATTAACTGTGATCTTTATATAAACTTGGAAGGCAGTAGCAGTTCTATGAAAGAAAATGTTAGGAAATCTCCTGAACCACCCAAAGAGCCTGTTTTCAACTGCCCAATATGCATGGGTCCTTTGGTTGAAGAAATGTCGACCAAGTGTGGTCATATTTTTTGCAAGAGTTGCATTAAGGCGGCAATTAATGCACAGGGTAAATGCCCTACCTGTAGGAAAAAGGTTACTGCAAAAGAGCTCATAAGGGTTTTTCTCCCATCAACTAGTTGA 636 0.4481 MSTRALRGAAISCYRRRKTALDLDLNQAPPGESRELEGLSTQLEPQGVQAILQPQVGQPAMIDVEAIDDDVIESTPRAFAEAKNNSRRSRSRAIVDVDLEDRTRVTKNNRNKRRRDYPSQTIINCDLYINLEGSSSSMKENVRKSPEPPKEPVFNCPICMGPLVEEMSTKCGHIFCKSCIKAAINAQGKCPTCRKKVTAKELIRVFLPSTS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g2080 211 PANTHER ELFLESS, ISOFORM B 2 211 - -
Alju12g2080 211 Pfam Zinc finger, C3HC4 type (RING finger) 155 193 - -
Alju12g2080 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 209 IPR013083 -
Alju12g2080 211 SUPERFAMILY RING/U-box 155 200 - -
Alju12g2080 211 SMART ring_2 156 193 IPR001841 -
Alju12g2080 211 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Alju12g2080 211 ProSiteProfiles Zinc finger RING-type profile. 156 194 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g2080 Alju-ChrAlju12 41699791 41702494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g2080 15 210 C3H Transcription Factor Family AT5G48655 53.535 3.51e-54 170