Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g2046 ATGAAGCCACTGCATTCGGGACGAGCCTATTCCGGAAAAGCAATTGCAGCGAAAGATGTCGGAAAAGGAGCAAAAGGGTTTCTTTCTTCTCGCTCCTCGCGCGCTGCTCTTCAATTTCCGTTCTTGAAAACAAACGCATTGTACCAACGGTCCAGATTCATTGGGGCGTTCCCTATCGACGGTCGATTCAACCGGAGCGTCCCAACTTGTGGAGCCCCAACGCCGTCTCTCTTCGGCCAACCTTTTCTTTTTCAACAAGACTTTCGTATCTTCTCATTCGATCTTCTCCCACTCCATTCTTTCTTCTCCGTCGAATTTCTGTCACGTTTTTGGGTTTCCATGGAGAATCACACCGCAAACAACACCAAAGCAGTTTCAGGAGGAGCAAAACCCATCAATGACAGCGAAGAGCGGTCCAATTTGAATGAACAGGAGGACACAGAAGAAGTGGATGTAGATGAGAATGGAGGTGGGGATGAAGAAGAAGGGGAAAGAACTGGATCTGGCTCCATCCAGTCTCCTCATCGCCCCCCTTCCAGAACCCCTTTTACTAACCTCAGTCAGGTCGATGCTGACCTCGCCCTTGCTCGAACCCTCCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAACAACGAAGGAAGTGATTATGGAAGTTGGGATGCTGGCAGCTATTTGCATGATGACGGGGATGATTTTGAAGATCTACATGATGGTACTGATGTTGATGATGATGAAGACGATGACCTTGATGATGAGGATGACGATGATGACAATAATGATGATGAAGATGCGTTTGATGCTCATGCTCATGCTAGTTCTGGCGAAATTGATGACACCAGCATTGAATTTGACCCTGATGTATTCTCTAGTGATGAAGCCTATGCAAGAGCATTACAAGAGGCTGAAGAGAGGGAAATGGCAGCTAGGCTATTTGCTATGGCTGGAATAAATGATCGGGAAGCTGAGGACACAGAAGACCATGGTGCTAATTCTCAGGAAGCATGGGAGGATGTTGATCCTGATGAACTTTCATATGAGGAACTCCTGGCATTGGGTGAAGTTGTTGGAACTGAGAGCAGAGGTCTTTCTACTGATACTATTGCCTCTTTGCCTTCAGTCAACTACAAGATCGGAAGTGATCAACATGGAAGTAATGATTCGTGCGTCATATGCCGGGTGGAGTATGAGGATGGTGAATCCTTGACTGCACTTTCTTGCAAACATTTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAATAAGGTTTGCCCTGTTTGCAGTGCTGAGGTTTCAGCTTCTGGGAGCAACTTGTAG 1326 0.4646 MKPLHSGRAYSGKAIAAKDVGKGAKGFLSSRSSRAALQFPFLKTNALYQRSRFIGAFPIDGRFNRSVPTCGAPTPSLFGQPFLFQQDFRIFSFDLLPLHSFFSVEFLSRFWVSMENHTANNTKAVSGGAKPINDSEERSNLNEQEDTEEVDVDENGGGDEEEGERTGSGSIQSPHRPPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWDAGSYLHDDGDDFEDLHDGTDVDDDEDDDLDDEDDDDDNNDDEDAFDAHAHASSGEIDDTSIEFDPDVFSSDEAYARALQEAEEREMAARLFAMAGINDREAEDTEDHGANSQEAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIASLPSVNYKIGSDQHGSNDSCVICRVEYEDGESLTALSCKHLYHPECINNWLKINKVCPVCSAEVSASGSNL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g2046 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 355 437 IPR013083 -
Alju12g2046 441 MobiDBLite consensus disorder prediction 235 264 - -
Alju12g2046 441 SUPERFAMILY RING/U-box 381 435 - -
Alju12g2046 441 MobiDBLite consensus disorder prediction 141 160 - -
Alju12g2046 441 FunFam E3 ubiquitin ligase BIG BROTHER-related 356 437 - -
Alju12g2046 441 MobiDBLite consensus disorder prediction 265 279 - -
Alju12g2046 441 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 140 439 IPR043312 -
Alju12g2046 441 Pfam Ring finger domain 388 430 IPR001841 -
Alju12g2046 441 MobiDBLite consensus disorder prediction 232 285 - -
Alju12g2046 441 MobiDBLite consensus disorder prediction 167 185 - -
Alju12g2046 441 MobiDBLite consensus disorder prediction 322 336 - -
Alju12g2046 441 ProSiteProfiles Zinc finger RING-type profile. 390 431 IPR001841 -
Alju12g2046 441 MobiDBLite consensus disorder prediction 322 341 - -
Alju12g2046 441 SMART ring_2 390 430 IPR001841 -
Alju12g2046 441 MobiDBLite consensus disorder prediction 121 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g2046 Alju-ChrAlju12 41318693 41324241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g2046 161 334 C3H Transcription Factor Family AT3G19910 49.714 2.78e-37 134