Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g2042 ATGTCTTCCTCTGGTGGAGTCGATCGGGATGGCGGAACAAAACCTTTTTTCTGCTACAAATGCGATCGCACAGTCGATATTCACGCCTCCGAATTCTCCGACCCTTTCTGTCCATTCTGCCTGCAAGGCTTTCTTGAAGAAGTTGAAAACCCTAACCCTAACCCTTTTGCAGACCCTGAGTCCTCTTTTGGCTTTGACCCTTTATCCTTACTTCCCCTTCTCCTGTCCACTGCTTCTCGCACCAGGATTCGATCGGATTCCGTTGATGCTGACATATTCGACCCTGTTCATTTTCTCCAGAACCACCTTCGAGATCTTCAGGCTGATGGCGCGAACGTCCAATTCGAGATCAATCATCCTTCTGAACAAGCTTTTCGGCTACCCACAAACATTGGCGATTACTTTCTTGGTCCTGGCCTGGAGCAATTGATACAACAGCTCGCGGAGAACGACCCAAACCGTCATGGCACCCCACCTGCCTCGAAATCTGCCGTACAGAATCTTCCAACTGTTACTGTCACCGATGAATTGTTGAGCTCGGAAATGAACCAGTGTGCGGTATGTCAGGATGAGTTCGAGAAGGGTACCCAGGTAAAGCAAATGCCTTGCAAGCATGTGTATCATGATGAGTGCCTGCTTCCTTGGCTCGAATTGCATAACTCTTGCCCTGTATGTCGATATGAGTTGCCCACCGATGACCCTGATTATGAGAACCCAGCCCACAGGGCCCAGGGGAATGCTAATGTGGGGTGGAGACCAGTTGGCAGTGCGAGCAGCAGCGGAGGGGGTAGCAGACCTGTTCAGAGGACTTTTAGGATATCATTGCGCTATCCATTTGGCTCACGTGAGTCTACTCAGGAGAGTAGCGAACGAGGATGGGGAAATATGCAAGAAGATTTGGATTGA 906 0.5 MSSSGGVDRDGGTKPFFCYKCDRTVDIHASEFSDPFCPFCLQGFLEEVENPNPNPFADPESSFGFDPLSLLPLLLSTASRTRIRSDSVDADIFDPVHFLQNHLRDLQADGANVQFEINHPSEQAFRLPTNIGDYFLGPGLEQLIQQLAENDPNRHGTPPASKSAVQNLPTVTVTDELLSSEMNQCAVCQDEFEKGTQVKQMPCKHVYHDECLLPWLELHNSCPVCRYELPTDDPDYENPAHRAQGNANVGWRPVGSASSSGGGSRPVQRTFRISLRYPFGSRESTQESSERGWGNMQEDLD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g2042 301 SMART ring_2 185 225 IPR001841 -
Alju12g2042 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 230 - -
Alju12g2042 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 232 IPR013083 -
Alju12g2042 301 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Alju12g2042 301 FunFam E3 ubiquitin-protein ligase RING1-like 146 232 - -
Alju12g2042 301 SUPERFAMILY RING/U-box 164 234 - -
Alju12g2042 301 Pfam zinc-ribbon 16 47 IPR039525 GO:0061630
Alju12g2042 301 MobiDBLite consensus disorder prediction 251 267 - -
Alju12g2042 301 MobiDBLite consensus disorder prediction 242 301 - -
Alju12g2042 301 MobiDBLite consensus disorder prediction 279 293 - -
Alju12g2042 301 Pfam Ring finger domain 183 226 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g2042 Alju-ChrAlju12 41289684 41290589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g2042 129 249 C3H Transcription Factor Family AT5G01980 47.107 1.67e-33 126