Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g2032 ATGGCCGAATCACCCTCTCCGACGCCCGAGCAACCCTTGCCGGAAGCCGATGATTCGCAGTACTGGTGCTACCACTGCGACAAGCGTGTGTCCGTAGAGACGCATCCTGAGGGCCCGGACATTCTCTGCCGCGAGTGCAAGCATGGGTTCGTCGAATCGATTCCTTCGCCGTCTTTGGCTCCGCCCTCCACGACTTCTGATCTGATCGACGATCCTCATTTTGAATCGCAATTTCTGCGCGTACTTCGACTACTTGCAGAGTCTGCGCGTGATGAAGACGCGCCGCCCCCTCCATCTCGAAACCGTTCCTCAGGCGATGATTTTCTCAGGGTTGAGTTCGAGGATTGGGATGACGATGAAGAAAGCAGCAACAACAATAACAACGACGAGGTCGACGAAGATGATGGGGTGGAGTTTCGCGATGAAGGAGAAGAGCACGAAGGTGCTGAAGAGCATGAAGATGGACTAGGAGTAGAAGACCTAAGTGGAGACGAAGCCGAAGAATATCTGAGAAGGAGGAGTATGCGGAACCGGATCAGAGACTTGACCAGTCGGATCAGAGACTTGGCAACCGGCACGAGCAGCAGGAGGAACAGGATCTTGGATTGGGCTGATATACTGATGGGTCTTGAAGACAATTCCATAGAACTAAGACTTCAAGTGCCCGATTCGGATCGATTTTTTGGAAACCCGGGAGATTATGTCGACGCTGCTGATTATGAAGCTCTGCTGCTGACCTTGGCAGAAAGCGATGGAAGCGGGAGAAGAGGGGCTCCACCGGCCGCAAAATCTGCGGTGGAGTCGCTGCCGACGGTGGAGATTGTGTCAGAGGATCAAGCTTTGGTGTGTGCTATATGCAAAGATATGGTGGGTGTGGGAAGCATGGCAAAGCAATTGCCCTGCGGCCATCAGTACCATGGGGATTGCATAGTTCCCTGGTTGGGCTCCAGAAATTCATGCCCAGTGTGCAGGTTTGAGCTTCCAACGGATGACCAGGACTATGAGGAGGAGAAGAAGAAGGTGATTGCCACCACTGCTAATGGGGCATCGGGTTCTGGTGGAACCGATGCGGTATCGGGTTTATTCTAA 1089 0.5326 MAESPSPTPEQPLPEADDSQYWCYHCDKRVSVETHPEGPDILCRECKHGFVESIPSPSLAPPSTTSDLIDDPHFESQFLRVLRLLAESARDEDAPPPPSRNRSSGDDFLRVEFEDWDDDEESSNNNNNDEVDEDDGVEFRDEGEEHEGAEEHEDGLGVEDLSGDEAEEYLRRRSMRNRIRDLTSRIRDLATGTSSRRNRILDWADILMGLEDNSIELRLQVPDSDRFFGNPGDYVDAADYEALLLTLAESDGSGRRGAPPAAKSAVESLPTVEIVSEDQALVCAICKDMVGVGSMAKQLPCGHQYHGDCIVPWLGSRNSCPVCRFELPTDDQDYEEEKKKVIATTANGASGSGGTDAVSGLF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g2032 362 MobiDBLite consensus disorder prediction 142 156 - -
Alju12g2032 362 SUPERFAMILY RING/U-box 278 330 - -
Alju12g2032 362 ProSiteProfiles Zinc finger RING-type profile. 283 324 IPR001841 -
Alju12g2032 362 FunFam E3 ubiquitin-protein ligase RING1-like 246 330 - -
Alju12g2032 362 Pfam Ring finger domain 283 324 IPR001841 -
Alju12g2032 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 330 IPR013083 -
Alju12g2032 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 118 328 - -
Alju12g2032 362 MobiDBLite consensus disorder prediction 115 141 - -
Alju12g2032 362 MobiDBLite consensus disorder prediction 88 107 - -
Alju12g2032 362 Pfam zinc-ribbon 20 54 IPR039525 GO:0061630
Alju12g2032 362 SMART ring_2 283 323 IPR001841 -
Alju12g2032 362 MobiDBLite consensus disorder prediction 115 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g2032 Alju-ChrAlju12 41194644 41195732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g2032 205 357 C3H Transcription Factor Family AT5G01980 48.387 2.34e-38 141