Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g2010 ATGCTTGACTCGTGGATCATTTTCATGATTCCATCAACTCAACTCGGAGAGTTTAGAAAGTATTCAGATTTCATGGCTCAGCTAGAGTGTATATATATTAGTTCATCGGATGATGATTTGGAGCTGGAGGAGATAGAAAATCCAAATTATGGAAATCGTTCTGGTGGGCCTGCTCGTGAAAGCAATGCTGGTTATGGTGGAGGGCTTACACTTGATGGTTCTTTGAGATTGTCAAATACTTCAAATGCAAGCTCTTCTGGTGCTTATAATCATTCACCATCTGACCACTATACTGAACCTGGGTCGAGCAGTTATATGCCAAATCGCGGATTTGCGCAAGGAGATGGATCTTTCAATATTTCGAAGAATGGTTACACAAGTCAGTTTCAAACAGTTAATTCTAGAATTGCTAAATCTCCTGGTTCTGATTATGAGAAAATACCATCACAACAAGCTTTTAAGAGGACCCTTTCATCATCGCTTCTGCCAGCTGCAATGAGGCCACTTCCATCTTCTCTTCAGTCATTTGCACCAGGAAGTAGCATGAACAGTGACCAGAGCACTTTGCGTGATAACTATGGCAGGGGCAATGATGAACGTGTGATGTATCAAAATGGTGGGATTAGGATTCTTCCTCCACCCATGATTCATGGGGCTGGGGAAGAAAGGACCTCGGAAAACGATGAGAGACTAATTTATCAGGCAGCATTGGAGGATCTCAATCAGCCAAAAGTTGAAGCTAATTTACCTGATGGTTTATTGTCTGTGTCGCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGGTTCAGAAGGAAACCAGAAGTTTGCATTGCTTGGGGGGGATTCTGGCTGATGATCAAGGCCTTGGAAAGACAATTTCAATGATTGCCCTCATACAAATGCAGAGGCAATTGCAGTCAAAATCGAAAGCAGATGAGATGTCCAATCATAAAGCCGAAGCATTAAATTTGGACGAGGATGATGAAAATGATAATGCTGGTGGTACTGGAAAGAATGAAGATGATACAAAGCCTATTCCTGAATCTAGTTCATCTTCCACAAGGGTGGTTGGCAGGAAAAGACCAGCTGCTGGTACACTGGTTGTTTGCCCTGCTAGTGTTCTTCGACAGTGGGCACGGGAATTGGATGACAAAGTAGGAGATGAAGCTAAGCTCTCTGTGTTGATTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTTGTTCTCACAACTTATTCTATTGTAACTAATGAGGTTCCAAAGCAACCTTTAGTTGAAGAGGATGAAATTGATGAAAAAATGGGGGAAAGATTTGGGTTATCCTCTGAGTTTGCTTTTGGTAAAAAGAGGAAAAAGGCTTATAATGCAAGTAAAAAGGGTAAAAAAGGTAAAAAGGGACTTGACAGTTCTTTTGACTGTGCATCGGGTGCCCTCGCAAAAGTTGGCTGGTTCAGGGTCATTCTAGATGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGAACACCTATTCAAAATGCTATTGAAGATCTCTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATAAAAGTGCCAATATCCAAAAATTCTATTCAAGGTTACAAGAAGCTTCAAGCTGTTCTAAGGGCTATAATGCTTCGTCGTACTAAAGGAACATTGATTGATGGACAGCCAATAATCACTCTGCCCCCTAAGACTATAACGCTGAATAAGGTGGATTTCTCCCTTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTAATCAATTTAAGGCATACGCTGCTGCCGGTACAGTCAATCAAAATTATGCAAATATTCTTTTAATGCTTTTACGCCTCCGTCAGGCTTGTGATCACCCACTTCTCGTCAAAGATTATAGTTCTGATTTTGTTGGGGGAAATTCGATAGAAATGGCCAGAACGCTTCCAAAGGAGATGCTAGTTAATCTTTTCAATTGTTTGGAAGCATCCTTTGCAATTTGTAAAGTTTGCAATGATACACCTGAAGATCCAGTTGTTACCATGTGTGGCCATGTTTTCTGTTATCAGTGTGTATCCGAACATTTGACAGGTTATGAAAATATGTGCCCAGCTGCTGATTGTAAAGAACAAATTGGTGATGATGTTATCTTCTCCAAAGCTACATTAAGAAGTTGCATCTCCGGTGATCCTGGCGATAGTAGTTCTTCAGATTCACGCCTTGTTGATTATTCAGCTGTGCAGCAGAGTAGTTATAGTTCATCTAAAATCAAGGCACTCCTTGAGATTCTAGAGCTACATTGTTGCCCTGGTCGTGCTAGAAATTCACTGCCTTCGGAAACTTCAGATATCGAAAACTTGGATTCAGATGTGATTGTTACAGGGGACACAAAAAAATGTTCAGAGGGCACAACTGATAGACCAATAAAGGCTATTGTTTTTTCTCAGTGGACCAGCATGTTGGACTTAGTCGAAGATACGATGAAGGACTCCGGCATTCGACACAGGAGACTTGATGGTACCATGACACTCGCTGCTAGGGATAAGTCTGTCAAGGATTTCAATACTGATCCTGAGGTAACTGTCATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAACATGGTTGCTGCTTGCCATGTTATTCTTTTAGATCTTTGGTGGAATCCAACAACCGAAGACCAAGCTGTTGATCGAGCTCACAGGATCGGACAGACACGTCCTGTGACTGTGACACGGCTCACTATAAGAGATACGGTTGAAGATAGAATCTTGGCTCTGCAGGAAGACAAGAGAAAGATGGTAGCGTCTGCTTTCGGTGAAGATCAAGCAGGCGGGACGGCAACTCGCCTAACAGTGGATGACCTAAAATATCTTTTCATGGTGTGA 2988 0.4183 MLDSWIIFMIPSTQLGEFRKYSDFMAQLECIYISSSDDDLELEEIENPNYGNRSGGPARESNAGYGGGLTLDGSLRLSNTSNASSSGAYNHSPSDHYTEPGSSSYMPNRGFAQGDGSFNISKNGYTSQFQTVNSRIAKSPGSDYEKIPSQQAFKRTLSSSLLPAAMRPLPSSLQSFAPGSSMNSDQSTLRDNYGRGNDERVMYQNGGIRILPPPMIHGAGEERTSENDERLIYQAALEDLNQPKVEANLPDGLLSVSLLRHQKIALAWMVQKETRSLHCLGGILADDQGLGKTISMIALIQMQRQLQSKSKADEMSNHKAEALNLDEDDENDNAGGTGKNEDDTKPIPESSSSSTRVVGRKRPAAGTLVVCPASVLRQWARELDDKVGDEAKLSVLIYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEEDEIDEKMGERFGLSSEFAFGKKRKKAYNASKKGKKGKKGLDSSFDCASGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIEDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGQPIITLPPKTITLNKVDFSLEERAFYTKLEADSRNQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYSSDFVGGNSIEMARTLPKEMLVNLFNCLEASFAICKVCNDTPEDPVVTMCGHVFCYQCVSEHLTGYENMCPAADCKEQIGDDVIFSKATLRSCISGDPGDSSSSDSRLVDYSAVQQSSYSSSKIKALLEILELHCCPGRARNSLPSETSDIENLDSDVIVTGDTKKCSEGTTDRPIKAIVFSQWTSMLDLVEDTMKDSGIRHRRLDGTMTLAARDKSVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILALQEDKRKMVASAFGEDQAGGTATRLTVDDLKYLFMV 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g2010 995 ProSitePatterns Zinc finger RING-type signature. 715 724 IPR017907 -
Alju12g2010 995 Gene3D - 227 323 IPR038718 -
Alju12g2010 995 Gene3D - 459 595 IPR038718 -
Alju12g2010 995 SMART ultradead3 254 563 IPR014001 -
Alju12g2010 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 584 IPR027417 -
Alju12g2010 995 MobiDBLite consensus disorder prediction 46 65 - -
Alju12g2010 995 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 347 436 - -
Alju12g2010 995 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 465 596 - -
Alju12g2010 995 Gene3D - 350 439 IPR038718 -
Alju12g2010 995 Pfam Zinc finger, C3HC4 type (RING finger) 700 736 - -
Alju12g2010 995 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 818 990 IPR001650 -
Alju12g2010 995 ProSiteProfiles Zinc finger RING-type profile. 700 736 IPR001841 -
Alju12g2010 995 MobiDBLite consensus disorder prediction 322 360 - -
Alju12g2010 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 994 IPR027417 -
Alju12g2010 995 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 105 994 - -
Alju12g2010 995 Pfam SNF2-related domain 265 661 IPR000330 GO:0005524|GO:0140658
Alju12g2010 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 750 IPR013083 -
Alju12g2010 995 SMART helicmild6 854 937 IPR001650 -
Alju12g2010 995 MobiDBLite consensus disorder prediction 332 346 - -
Alju12g2010 995 CDD DEXDc_SHPRH-like 258 584 - -
Alju12g2010 995 CDD SF2_C_SNF 838 947 - -
Alju12g2010 995 MobiDBLite consensus disorder prediction 76 105 - -
Alju12g2010 995 Pfam Helicase conserved C-terminal domain 841 937 IPR001650 -
Alju12g2010 995 SUPERFAMILY RING/U-box 697 746 - -
Alju12g2010 995 SMART ring_2 700 738 IPR001841 -
Alju12g2010 995 Gene3D - 599 994 IPR027417 -
Alju12g2010 995 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 546 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g2010 Alju-ChrAlju12 41049558 41054668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g2010 35 895 RAD5 or RAD16-like Gene Family AT1G50410 56.763 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju12g2010 SNF2_N 1.3e-67 CL0023