Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g2009 ATGCACCACAATTTGGATCATGTCCGTGAATTCCTTAACTCAACTTGGAGAGTTTGTTCTCTGGTAGGTGGTTGGGTTTCTAGCTTAATATTGCAACCCTATAGAGACGTGGAAAGAGGAGGTTATTCAGATTTCATGGCTCAAGTAGACTCTATATATATCAGTTCATCGGATGATGACCTGGACCTGGACCTGGACCTGGAGGAGACAGAAACCTCTAATTATAGGAACCTCCCAGCATGGGCTGCTAGAGGAAGTAATGCTGGCTATGGTGGAGGGCATGATCAGGATATTTCTTCTAAACGGGAAAATACTTTGAATGCAAGCTCTTCGAGAGCTTATAATCATTCACAAGTCAAGCACAGTACTAAACCTTGGTCTAGCAACAATGTGCTGAATCACAGAGTAGCACAAAGAGATGAATCTTTCAATTTTTCAGAGAGCAGTAAAACAAATCAGCATCAGACGGTCAGTTCACAAATTGCAAATACTGGTACTGATTATGGGAAAATGCCATCCCAACAAGAATCAAGGAGGATCCTTCCATCATACCTTCAGCCATCTACTGAAAAGCCTCTTCCATCTCCTCTCAAGTCATTTTCATCGGACATTAGGTTGAACAGTTCAAAAGATAATTTGAGCAGAAGCGAGATTCATGATACCCTTGGGAATCATCATAATGGTGCAATTAGGATTCTTCCCCCAACTTTGATGCATGGAAAAAACCTCCCTTTTATGCATTTACCTAGTTCGAGTGAATCTACATATCATTCTGGAGCTGGTGAAGAAAGGGCTTCTGAAACAGATGAAAGGCTAATTTATCAGGCAGCATTGGAGGACCTCAATCAGCCAAAGGTTGAAGCTGCTTTACCTGATGGTTTATTGTCTGTATCACTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAAACAGAAGCTTGCATTGCTTGGGAGGAATCCTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGATCATTGCAGTCAGAATCAAAGACAGATGAGATGCAGTTTCATAAAACTGAAGCATTAAATTTGGATGAGGATGATGACAATGATAAGGGCAATGGTACTGTAGGAAAATCTAAAAAGAACGAAGAAATTGGTGATATAAAACGTTCTAAATCAGTTAGATCATCTTCAACCCAGGTGCTTGGTAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTACGACAGTGGGCGAGGGAACTGGAAGACAAAGTTGGAGATGAAGCTAAGCTCTCTGTGTTGTTTTATCATGGGTGTTATAGGACAAAGGATCCTGTTGAACTTGCTGATTATGATGTTGTTCTCACAACATATTCTATTGTGACTACTGAAGTTCCAAAGCAACCTTTAGTGGAAGAGGATGAAATTGATGGGAAAAATGAGGAAAAATTTGGGTCATCCTCTGAATTTGCTTTTGGTAATAAGAGGAAAAAGATTTATAATGAAAGTAAAAAGGGTAAAAAGGGTAAAAAGGGAATTGTCAGTTATTGTGCTTCTGGCCCTCTTGCCCAAGTGGCTTGGTTTAGGGTTATTCTAGATGAAGCTCAAGTGATAAAAAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGTACGCCGATTCAAAACACTATAGACGAATTGTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGAATACAAGTCTTTCTACAATACAATAAAGGTACCAATATCCAAAAATTCTATCCAGGGTTACAAGAAACTTCAAGCGGTTCTGAGAGCTATAATGCTACGTCGTACAAAAGGAACATTGATTGACGGGGAGCCTATTGTTAATCTGCCCCCTAAAACAATTCAGCTGCATAAGGTGGATTTCTCCATTGAGGAGCGTGCCTTCTACACCAAGTTGGAAGCAGATACACGAACTCAATTTAAGGCATATGCTGCTGCTGGTACAGTCAAGCAAAATTATGCAAATATTCTTTCAATGATTTTACGCCTCCGTCAAGCTTGTGACCATCCATTTCTTGTTAAAGATAATTGTTCTGATGTTGTTGGGGGAATTTCAGTTGAAATGGCAAAAATGCTTCCGAGGGAGATGCTGATTAATCTCTTTAATTGCTTGGAAACATCCTTTGCCATATGTGGTGTTTGCAGTGATCCACCTGAAAATCCAGTTGTTACAATGTGTGGGCATGTTTTCTGTTATCAGTGTGTATCAGAATTTTTGACGGGTTATGATAATATCTGCCCTGCAATTGAGTGCAACGAAAAAATTGGTGATGATGTTGTTTTCTCCAAATCTACTTTAAGAAGTGGCATCTCTGGTGCCCTTGGTGATGCTAGTTCTGCAAGTTATCAACATGTTGATTTTTCAGTACTACGGCAGAGAAATTACTGTTCATCTAAAATCAAAGCAGTCCTTGAGATTCTGCAGTCATATTGTAAAGTAAAGAATCCAGGTTCCGACAGATTGAGTTCGTCAGGATGCAGTAGAAATTCATCTTCTGAAACTTCAGACGATGAAGATTTCTATTCAGAAGTTCGTCGTACAAAATACACAGGAAAATATTCAGAGTGCTCAACTGAAGGACCGGTAAAGGCTATTGTTTTTTCCCAGTGGAATAGCATGCTGGACTTAGTTGAACATGCACTGGAACAGTTCTCCATCACGTACAGGAGACTTGATGGCACCATGACGCTGGTTGCAAGGGATAAAGCTGTTGAAGATTTTAATACTGATCCTGAGGTAATTGTCATGCTGATGTCACTAAAAGCAGGAAACCTCGGTTTAAATATGGCTGCTGCATGCCATGTTATTCTTTTGGATCTTTGGTGGAACCCAACAACTGAAGATCAAGCTGTTGATCGAGCCCATAGAATTGGACAGATCCGCCCTGTTACTGTGACACGGCTTACCATAAAAGATACTGTTGAGGATAGAATACTGGCTCTCCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGATCAAGGCGGGGCTTCTGGAACTCGTCTTACAGTGGACGATCTAAAATATCTTTTCATGGTCTAA 3153 0.4075 MHHNLDHVREFLNSTWRVCSLVGGWVSSLILQPYRDVERGGYSDFMAQVDSIYISSSDDDLDLDLDLEETETSNYRNLPAWAARGSNAGYGGGHDQDISSKRENTLNASSSRAYNHSQVKHSTKPWSSNNVLNHRVAQRDESFNFSESSKTNQHQTVSSQIANTGTDYGKMPSQQESRRILPSYLQPSTEKPLPSPLKSFSSDIRLNSSKDNLSRSEIHDTLGNHHNGAIRILPPTLMHGKNLPFMHLPSSSESTYHSGAGEERASETDERLIYQAALEDLNQPKVEAALPDGLLSVSLLRHQKIALAWMLQKENRSLHCLGGILADDQGLGKTISMIALIQMQRSLQSESKTDEMQFHKTEALNLDEDDDNDKGNGTVGKSKKNEEIGDIKRSKSVRSSSTQVLGRKRPAAGTLVVCPASVLRQWARELEDKVGDEAKLSVLFYHGCYRTKDPVELADYDVVLTTYSIVTTEVPKQPLVEEDEIDGKNEEKFGSSSEFAFGNKRKKIYNESKKGKKGKKGIVSYCASGPLAQVAWFRVILDEAQVIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDELYSYFRFLKYDPYAEYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGEPIVNLPPKTIQLHKVDFSIEERAFYTKLEADTRTQFKAYAAAGTVKQNYANILSMILRLRQACDHPFLVKDNCSDVVGGISVEMAKMLPREMLINLFNCLETSFAICGVCSDPPENPVVTMCGHVFCYQCVSEFLTGYDNICPAIECNEKIGDDVVFSKSTLRSGISGALGDASSASYQHVDFSVLRQRNYCSSKIKAVLEILQSYCKVKNPGSDRLSSSGCSRNSSSETSDDEDFYSEVRRTKYTGKYSECSTEGPVKAIVFSQWNSMLDLVEHALEQFSITYRRLDGTMTLVARDKAVEDFNTDPEVIVMLMSLKAGNLGLNMAAACHVILLDLWWNPTTEDQAVDRAHRIGQIRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDQGGASGTRLTVDDLKYLFMV 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g2009 1050 SMART ultradead3 295 599 IPR014001 -
Alju12g2009 1050 MobiDBLite consensus disorder prediction 185 204 - -
Alju12g2009 1050 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 394 483 - -
Alju12g2009 1050 ProSiteProfiles Zinc finger RING-type profile. 745 781 IPR001841 -
Alju12g2009 1050 MobiDBLite consensus disorder prediction 87 128 - -
Alju12g2009 1050 Pfam SNF2-related domain 302 706 IPR000330 GO:0005524|GO:0140658
Alju12g2009 1050 CDD SF2_C_SNF 897 1002 - -
Alju12g2009 1050 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 512 641 - -
Alju12g2009 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 739 795 IPR013083 -
Alju12g2009 1050 SMART helicmild6 909 992 IPR001650 -
Alju12g2009 1050 MobiDBLite consensus disorder prediction 850 873 - -
Alju12g2009 1050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 629 IPR027417 -
Alju12g2009 1050 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 108 1049 - -
Alju12g2009 1050 MobiDBLite consensus disorder prediction 143 177 - -
Alju12g2009 1050 Pfam Zinc finger, C3HC4 type (RING finger) 745 781 - -
Alju12g2009 1050 Gene3D - 644 1049 IPR027417 -
Alju12g2009 1050 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 870 1045 IPR001650 -
Alju12g2009 1050 MobiDBLite consensus disorder prediction 102 128 - -
Alju12g2009 1050 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 314 591 IPR014001 -
Alju12g2009 1050 MobiDBLite consensus disorder prediction 362 394 - -
Alju12g2009 1050 MobiDBLite consensus disorder prediction 362 404 - -
Alju12g2009 1050 ProSitePatterns Zinc finger RING-type signature. 760 769 IPR017907 -
Alju12g2009 1050 SMART ring_2 745 783 IPR001841 -
Alju12g2009 1050 MobiDBLite consensus disorder prediction 850 865 - -
Alju12g2009 1050 Pfam Helicase conserved C-terminal domain 893 992 IPR001650 -
Alju12g2009 1050 SUPERFAMILY RING/U-box 741 790 - -
Alju12g2009 1050 Gene3D - 495 640 IPR038718 -
Alju12g2009 1050 Gene3D - 272 358 IPR038718 -
Alju12g2009 1050 Gene3D - 394 486 IPR038718 -
Alju12g2009 1050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 1049 IPR027417 -
Alju12g2009 1050 CDD DEXDc_SHPRH-like 299 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g2009 Alju-ChrAlju12 41039636 41046174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g2009 60 950 RAD5 or RAD16-like Gene Family AT1G50410 53.297 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju12g2009 SNF2_N 1.2e-68 CL0023