Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g2006 ATGGCAGCTGTTATTCTAGTTTTTGAAAGCATGCAGACAAGTGAGGAGGATAAGACTGAGTTTATGCTGTTTTTGTCTACCCTGCATCTGCGTCTTTTTCTTCCACAAGGCATTTCTGTTTGTCTTTTAAGAATTAGGGTAGATGCAGTGGTGGGCAAATGGAGGGTGGATGAGAGTGCCAGGCGGCAAGTATTCGAAATGGCGGGTGGAAAATCAACCAGATCGAACCCATCACAGGCTAGAAAGAGAGTTGATGCGGTCGATTCTCAGGCTGCTACTGGTCTTGTTCGCGCCAAAGATGGCAGTGCTTTTGCCAAATGTGAAGAGTGCAACAAGAATGTTCCAGTGGCCCTCATCAGCATGCACAGTTGCAGCCTTGATGCTAAAATTAAAATGAATCTGGAGGCTCAGGTTGTGGAAAAGCCTGCTGAGGTCAAGAAGCCAGCGGAGAGGAAGAAGCCCAAATCAAGCGAGCCCAAGGCTAAAAAGGCCAAGGTGGAGAAAGTGGAGAAGGGAAAGAAAGGCAAGGATCCTAACAAGCCCAAGCGTCCTCCTACAACCTTCTTTGTCTTCCTGGAAGAGTTTAGAAAATCTTTTAAGGAGGCAAATCCTGATTCTAAGGATGTTAAAAGGGTTGGTAAAGAGGCAGGTGAGAAGTGGAAATCCTTATCTGATGAAGAGAGGAAGCCTTACTTGGATAGAGCTGCTGAACTCAAGGCGGAATATGAGAAAGCATTAGAAAGTTATAATGCTGCAGAAGACGGAGCTGATCAAGAGGGTTCTGATAAAGAAAATGCCGCTGAGGAAGCGGGTCAAGAGGAGTCTGAGAAGGACGACGCAACAAAGGAAAATGAAGAACTCACTGATGAGGAGTAG 876 0.4612 MAAVILVFESMQTSEEDKTEFMLFLSTLHLRLFLPQGISVCLLRIRVDAVVGKWRVDESARRQVFEMAGGKSTRSNPSQARKRVDAVDSQAATGLVRAKDGSAFAKCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEVKKPAERKKPKSSEPKAKKAKVEKVEKGKKGKDPNKPKRPPTTFFVFLEEFRKSFKEANPDSKDVKRVGKEAGEKWKSLSDEERKPYLDRAAELKAEYEKALESYNAAEDGADQEGSDKENAAEEAGQEESEKDDATKENEELTDEE 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g2006 291 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 181 250 IPR009071 -
Alju12g2006 291 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 79 283 - -
Alju12g2006 291 MobiDBLite consensus disorder prediction 247 291 - -
Alju12g2006 291 MobiDBLite consensus disorder prediction 142 181 - -
Alju12g2006 291 MobiDBLite consensus disorder prediction 247 282 - -
Alju12g2006 291 MobiDBLite consensus disorder prediction 202 231 - -
Alju12g2006 291 Pfam HMG (high mobility group) box 181 250 IPR009071 -
Alju12g2006 291 Coils Coil 263 290 - -
Alju12g2006 291 SUPERFAMILY HMG-box 168 250 IPR036910 -
Alju12g2006 291 Coils Coil 232 259 - -
Alju12g2006 291 CDD HMG-box_AtHMGB1-like 182 242 - -
Alju12g2006 291 Gene3D High mobility group box domain 163 265 IPR036910 -
Alju12g2006 291 SMART hmgende2 180 251 IPR009071 -
Alju12g2006 291 MobiDBLite consensus disorder prediction 142 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g2006 Alju-ChrAlju12 41023253 41026387 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Alju12g2006 HMG_box 2.4e-20 CL0114