Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1997 ATGCTGGACACTAGTGCTAATTCTTCTGATGCGGCTTCCTCAGAAAATAATGGAGTGATACTTCCCAAGAGAAAAAGAAGACCCCCAGGCACACCAGATCCAGATGCAGAGGTGGTGTGTTTGTCACCCAAGACCTTGTTGGAATCAGACAGATATGTGTGTGAGATCTGTAACCAAGGGTTTCAACGAGACCAGAATCTTCAGATGCATAGAAGAAGACACAAAGTACCATGGAAATTGCTGAAAAGGGAGAGTAATAATACGCAAGAGGTGAAGAAGAAGGTGTTTGTGTGCCCTGAGCCTACTTGTTTGCACCACAATCCTTGCCATGCTCTTGGAGATCTTGTGGGCATCAAGAAGCATTTCAGGAGGAAGCATAGTAATCACAAGCAGTGGGTTTGTGATAAGTGTTCTAAAGGTTATGCTGTTCAGTCTGATTACAAAGCTCACCTCAAAACCTGCGGTACCAGAGGCCATTCTTGTGACTGTGGTCGTGTCTTTTCCAGGGTTGAGAGTTTCATAGAACATCAAGACGCGTGCACTGTACGAACAGCTTCAAGTACTAGTCCATCTAGTGATCATCAGGCCAATTTAGTTCCATTATTGCAAGGCTTGCCTGTGCCAAAACCACCACCTCCATTGTTAACCTCCGACTTACCAAACAATAATAAGCCTCCCTGCACCACTACTACTACTCATAATAAGAGACATAACATTCTAGAAGAACTCCAGCTCCTACGTTGTTCTTCTTCATCAGACGCTCGAGGAAACCGAGGTTCTTCTGATCATCATGGGGAGGATAACAACAACAACTACGAAACTGATCAAACCCATCTGAAGCTTTCAATAGGGTCATGCAGTAACAACAACAATAACAGAAACAAGAATGTGTTATTGTTGAAAGAGTGTGCGAGTGAAGAGCTAAAGTTGGCTGTGGCTGAGAAGGCTTATGCAGAAGAAGCAAGAAGAGAGGCAAAGCGAGAGATAGAGATAGCTGAGATTGAGTTTGGGAAAGCAAAGAGGATAAGGAAGGAAGCTCAAGAGGAGCTTGAGAAAGCTGAGGCTTTGAAGAAGCAAGCCATGATGAAGATGAGTTCCACTCTTCTGCAAATTACTTGTCATGCTTGTAAGCAACAGTTCCAATCCTCCATTATTGCCGGGGTTTCATCAGAAGAGACCTCTCTTGCTATGAGCTGCATGTCCTCCCCCACCACTGAAGGGGAAGGAGATCAATAA 1236 0.4442 MLDTSANSSDAASSENNGVILPKRKRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESNNTQEVKKKVFVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRTASSTSPSSDHQANLVPLLQGLPVPKPPPPLLTSDLPNNNKPPCTTTTTHNKRHNILEELQLLRCSSSSDARGNRGSSDHHGEDNNNNYETDQTHLKLSIGSCSNNNNNRNKNVLLLKECASEELKLAVAEKAYAEEARREAKREIEIAEIEFGKAKRIRKEAQEELEKAEALKKQAMMKMSSTLLQITCHACKQQFQSSIIAGVSSEETSLAMSCMSSPTTEGEGDQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1997 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Alju12g1997 411 MobiDBLite consensus disorder prediction 1 37 - -
Alju12g1997 411 FunFam protein indeterminate-domain 12-like 31 102 - -
Alju12g1997 411 SUPERFAMILY beta-beta-alpha zinc fingers 51 152 IPR036236 -
Alju12g1997 411 Gene3D Classic Zinc Finger 117 196 - -
Alju12g1997 411 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 374 IPR031140 -
Alju12g1997 411 MobiDBLite consensus disorder prediction 257 273 - -
Alju12g1997 411 SMART c2h2final6 52 74 IPR013087 -
Alju12g1997 411 SMART c2h2final6 132 159 IPR013087 -
Alju12g1997 411 SMART c2h2final6 96 126 IPR013087 -
Alju12g1997 411 Coils Coil 308 363 - -
Alju12g1997 411 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Alju12g1997 411 MobiDBLite consensus disorder prediction 220 234 - -
Alju12g1997 411 MobiDBLite consensus disorder prediction 1 16 - -
Alju12g1997 411 MobiDBLite consensus disorder prediction 250 273 - -
Alju12g1997 411 Gene3D Classic Zinc Finger 30 100 - -
Alju12g1997 411 MobiDBLite consensus disorder prediction 208 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1997 Alju-ChrAlju12 40946094 40948295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1997 23 408 C2H2 Transcription Factor Family AT2G01940 57.284 2.49e-146 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju12g1997 None None None