Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1965 ATGGGGAAGAAGAAGAAGAGGGTTTCTTCGAAGGTCTGGTGCTACTATTGCGACCGGGAGTTCGATGACGAAAAGATTTTGGTTCAGCATCAGAAGGCTAAGCACTTCAAATGCCATGTCTGCCACAAGAAACTCTCCACTGCTGGCGGCATGGCCATTCACGTGCTTCAGGTTCATAAAGAGAGCGTCACCAAGGTGCCCAATGCAAAACCTGGTAGAGAGTCAACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGACATATTGGCCGCCCATTATGGAGATGAAGAGGATGAAGCTCCATCAAAGACAGCCAAAATGGATATCCCATCAAGTCAGCTTGTGAGTGGAGTTGTCCCAGCACCATTAGGCATGGGATATCCTCCTCAGTCAACCTTGGGTACTATGCCACCTATTTATAATCCTGCAGTACCTGTGCCTCCTGCCACTTGGCCGGTTCCACCTCGACCTCAGCCTTGGTATCCGCAACCTCCATCTGTTTCCATTCCTCCTCCTGCCCCATATGTACAGCAGCCTTTGTTTCCTGTTCAGAATGTGAGGCCACCTCTACCATCAACCGCCTCTCCTGCCCTTCCAACTTCTCAAGTTGCTCCTCCTGGGTTACCTCCAACATCTGCTCCAGTTTCACAACCATTGTTTCCTGTTGTTGGAAATAACCATACGATGGCCCAAAGTTCAACATTTTCTACCCCATCACTTTCTAGCAGTGTCCCATCTGCATTGCCTGCAAGTGTCCCTGCTGATCCTTATTCAAGTGCCAACACAACTTTGACAAATAATTATCAAGCACTAGGAGTTGCAGGAGGGACATCAGGCAACTCGCATTCTTATGCTTCCGGTCCAAATACTGGTGGTCCTTCAATTGGACCACCCCCAGTAATTACAAACAAAGCTCCTGCAACTCAACCTGCCACTAATGAGGTCTATTTAGTCTGGGATGATGAGGCGATGTCCATGGAGGAAAGAAGAATGTCCTTGCCAAAATACCAGGTGCATGATGAAACTAGCCAGATGAGTTCTATTGACGCAGCCATAGACAAGAGGATACTGGAAAGCAGGCTAGCAGATTCTGATGCAGTTTCATCATTCTTTGCATGGAGTTTTCAATCGATTCTATTGGCAGGAAAAAAAAATGATGTGGATGCCCGTTTGTCCCGGGTAGGGGCGGGGTTAGTTCAGTTTAAATGGGATCTCATAGGAAGTTGCAGAACTGCAGGGGTCTTTTAA 1254 0.4737 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGDEEDEAPSKTAKMDIPSSQLVSGVVPAPLGMGYPPQSTLGTMPPIYNPAVPVPPATWPVPPRPQPWYPQPPSVSIPPPAPYVQQPLFPVQNVRPPLPSTASPALPTSQVAPPGLPPTSAPVSQPLFPVVGNNHTMAQSSTFSTPSLSSSVPSALPASVPADPYSSANTTLTNNYQALGVAGGTSGNSHSYASGPNTGGPSIGPPPVITNKAPATQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDETSQMSSIDAAIDKRILESRLADSDAVSSFFAWSFQSILLAGKKNDVDARLSRVGAGLVQFKWDLIGSCRTAGVF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1965 417 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Alju12g1965 417 MobiDBLite consensus disorder prediction 281 309 - -
Alju12g1965 417 SMART c2h2final6 12 35 IPR013087 -
Alju12g1965 417 SMART c2h2final6 36 59 IPR013087 -
Alju12g1965 417 Gene3D Classic Zinc Finger 1 66 - -
Alju12g1965 417 MobiDBLite consensus disorder prediction 189 212 - -
Alju12g1965 417 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Alju12g1965 417 PANTHER ZINC FINGER PROTEIN 207 1 363 - -
Alju12g1965 417 CDD SUF4-like 13 92 - -
Alju12g1965 417 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1965 1 349 C2H2 Transcription Factor Family AT1G30970 64.463 1.51e-141 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju12g1965 None None None