Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1962 ATGCGAGGGAGACAAGAGCGTATCACAGAAAATCCTGAAAATTCGATTTACTTTCCTTATCTGCTTAAAATAAAGCAGGAAACAGGAAAGCATAGCATAAAAGCGCATAAAAAATTCTGCTTGTACAGCGAGCGAGCCTCAGATCAAGGACGAACCAAACTGGTTCATATTGTTCATTGTACCCTCACCTCCTCTTTTCTGTGTAGAGATGAAGAGGACGGGAGGGGAAGAAGGAAACTAAGCATCGAAGGTTTGTGGCTGATGGGTATCAAGATGCAGAGCCAGCACCAGCACCAACCTGTGGCTTTGAGGTTCCATGAGCAAACGGGGGGTAAAAGAAAATACACTTTCATTCGGTCTAAAAGAGCCTGGCTCCCAAAGTTTCTGCTGCTGTGGATCATGCTGATGATGCTATTCAGTGGGTCCATCTATAATGCTATGGATGCTGATAATAAAGTTAGGAGGAGGGAGGCTCTGGGTAGCCTCTGTGAGCAAAGGGCTACGATGTTGCAAGATCAATTTAGTGTTAGTGTTAACCATGTCCATGCCCTAGCTATTCTGGTTTCAACCTTCCACTACTACAGAAACCCATCTGCAATTGATCAGGAAACCTTTGCGGAGTATACTGCTAGAACAGCATTTGAGCGGCCATTACTGAATGGGGTGGCCTATGCACAAAGGGTAGTTGACTCTGAAAGAGAAAACTTTGAGAGGCAACACGGATGGGGGATTAAGACTATGGAAAGAGAACCTTCCCCGGTTCGAGATGAGTATGCACCGGTGATATTTGCTCAAGAAACTATCTCTTATCTGAAGTCTCTTGATATGATGTCAGGGCAGGAGGACCGAGAAAACATTCTGAGGGCTAGGGCCACTGGGAAAGCTGTATTGACTAGCCCATTCAGGCTGTTGGGCTCTCATCATCTTGGTGTGGTTTTGACGTTCCCTGTTTACAAATCCAAGCTCTCCCCAGAGCCAACTATGAATGAGCGCGTAGAGGCAACTGCAGGATATGTTGGAGGGTCCTTTGATGTTGAATCCCTTGTGGAGAATTTACTTGGGCAGCTTGCTGGTAACCAAGCAATTTTGGTGCATGTGTATGATATCACAAACTCTACTAACCGACTAATCATGTACGGCAACCAATATGAAGAAGGTGACAAGTCTCTTGTACATAAAAGCAAGCTTGATTTTGGAGATCCTTACAGGAAACATGAGATGATATGTAGGTATCATCAGAAGGCACCAACATCTTGGACAGCGCTTACCACAGCGTTTTTATTCTTTGTAATTGGTTTATTAGTGGGATACATTTTATATGGTGCTGCAATTCATATTGTCAAAGTTGAGGATGATTTCCAGAAGATGTCGGAACTGAAAGTTCGAGCTGAAGCTGCTGATGTTGCCAAATCCCAGTTTTTAGCAACTGTTTCTCATGAAATTAGAACGCCAATAAATGGCATCCTAGGAATGCTTGGTCTGCTTCTAGATACGGAATTGAGTTCAACTCAACGAGATTTTGCTCAGACTGCTCAAGCATGCGGAAAAGCACTGATAGCATTAATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGCTGGAAGCAGTTCCATTTGACCTGCGTTCCATACTTGATGATGTCCTTTCTTTATTCTCTGAGAAGTCTAGACACAAAGGTTTAGAGTTGGCAGTCTTTGTTTCTGATAAAGTTCCAGACATTGTTATGGGAGATCCTGGGAGATTCAGGCAAATAATAACCAACCTGGTTGGCAACTCTGTCAAATTCACTGAACGAGGGCACATATTTGTCAAGGTTCATCTAGCTGAAAATATAACTGCCACAATGAAGGGAAAATCTGAGGCATATCTTAATGGAGGATCAGATGACGTTGCACATATGGCTGGTGGTTCTCAGTCCAAAACTCTTAGTGGATGTGATGCAGCTGATGAAAGGAACTGCTGGGATAATTTGAAGCATCTAATTGCTGATGAAGAATTTTGCTTTGATGCATCAAGTAAAAAGATGACCACTATTCAAGTTTCTGAGCAAGTCACTCTGATGGTCTGTGTAGAGGATACTGGAATTGGGATTCCCTTTTCTGCCCAGGATAGGATTTTCATGCCTTTTGTGCAGGCAGACAGCTCAACCTCTCGAAACTATGGTGGGACTGGTATTGGATTAAGCATCACTAAGTGTTTGGTTGAATTAATGGGTGGTCAAATAAACTTCATAAGCCGACCCCAGGTTGGGAGCACATTCTCCTTCACTGCTGTTTTTGGTACACATAAGAAAAATCCAACCAATGACGTGAAGAAACATAATGTGGAAGATCTACCTTCTAGTTTTAGAGGTCTGAAAGCCGTAGTGGTTGATGGAAAACCTGTTAGAGCTGCTGTGACTCGATACCATCTGAAGAGGCTTGGGATATTAGCTAAGGTTGCTAATAACATTAACAAGGCCATTGCTTTATGCGGGAAAAACGGTTCATTGACATCTGGAATGTTCCAGCCAGATATAATTTTGGTTGAGAAGGATTCGTGGATATCTGGAGAAGATGGAAGCTCCAATGTTTGGCAACTAGACTGGAAACAGAACGAGCATACAATTAAGTTGCCCCAATTGATCCTTCTTGCAACCAATATTAGTAATGTTGAGTTTGATAAAGCTAAGGCTGCTGGTTTTGCTGATACTGTTATCATGAAACCCCTGAGAGCTAGTATGGTAGCTGCTTGTCTTCAGCAGGATCTTGGTGTGGGGAAGAAGAGACAGCAAGGAAATGACATGAATAACGGTTCCACTTATCTTCAAGGCCTTCTTTGTGAAAAGAAAATTTTGGTGGTTGATGACAATGTGGTGAACCGGAGGGTTGCTGCAGGTGCATTGAAAAAGTTTGGAGCTGATGTGAAGTGTGTCGCAAGTGGCAAAGCAGCGCTTGAAATGCTTCAATTGCCTCACAGTTTTGATGCCTGCTTCATGGACATCCAAATGCCAGAAATGGATGGGTTTGAAGCAACACAGCGAATCCGGCTGATGGAAGGGGAGGCAAATGAGCTGGCAAACGGTGAATCTAATGAAGGAAATGCCTCAAAGAGAGAGTGGCATTTGCCAATATTGGCCATGACAGCTGATGTAATTCATGCTACCTATGATGAGTGCCTGAAATGTGGTATGGATGGATACGTGTCGAAGCCCTTTGAGGAAGAGAATCTCTATCAAGAAGTTGCAAAGTTCTTAAAATCCAAGCCTATCTCAGACTCATGA 3276 0.4325 MRGRQERITENPENSIYFPYLLKIKQETGKHSIKAHKKFCLYSERASDQGRTKLVHIVHCTLTSSFLCRDEEDGRGRRKLSIEGLWLMGIKMQSQHQHQPVALRFHEQTGGKRKYTFIRSKRAWLPKFLLLWIMLMMLFSGSIYNAMDADNKVRRREALGSLCEQRATMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLNGVAYAQRVVDSERENFERQHGWGIKTMEREPSPVRDEYAPVIFAQETISYLKSLDMMSGQEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLSPEPTMNERVEATAGYVGGSFDVESLVENLLGQLAGNQAILVHVYDITNSTNRLIMYGNQYEEGDKSLVHKSKLDFGDPYRKHEMICRYHQKAPTSWTALTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFQKMSELKVRAEAADVAKSQFLATVSHEIRTPINGILGMLGLLLDTELSSTQRDFAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENITATMKGKSEAYLNGGSDDVAHMAGGSQSKTLSGCDAADERNCWDNLKHLIADEEFCFDASSKKMTTIQVSEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSITKCLVELMGGQINFISRPQVGSTFSFTAVFGTHKKNPTNDVKKHNVEDLPSSFRGLKAVVVDGKPVRAAVTRYHLKRLGILAKVANNINKAIALCGKNGSLTSGMFQPDIILVEKDSWISGEDGSSNVWQLDWKQNEHTIKLPQLILLATNISNVEFDKAKAAGFADTVIMKPLRASMVAACLQQDLGVGKKRQQGNDMNNGSTYLQGLLCEKKILVVDDNVVNRRVAAGALKKFGADVKCVASGKAALEMLQLPHSFDACFMDIQMPEMDGFEATQRIRLMEGEANELANGESNEGNASKREWHLPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQEVAKFLKSKPISDS 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1962 1091 Gene3D - 147 199 - -
Alju12g1962 1091 Coils Coil 519 539 - -
Alju12g1962 1091 ProSiteProfiles Response regulatory domain profile. 948 1083 IPR001789 GO:0000160
Alju12g1962 1091 ProSiteProfiles Response regulatory domain profile. 791 921 IPR001789 GO:0000160
Alju12g1962 1091 Pfam CHASE domain 199 379 IPR006189 -
Alju12g1962 1091 Gene3D - 943 1090 - -
Alju12g1962 1091 PRINTS Bacterial sensor protein C-terminal signature 709 719 IPR004358 GO:0016310|GO:0016772
Alju12g1962 1091 PRINTS Bacterial sensor protein C-terminal signature 691 705 IPR004358 GO:0016310|GO:0016772
Alju12g1962 1091 PRINTS Bacterial sensor protein C-terminal signature 750 763 IPR004358 GO:0016310|GO:0016772
Alju12g1962 1091 PRINTS Bacterial sensor protein C-terminal signature 726 744 IPR004358 GO:0016310|GO:0016772
Alju12g1962 1091 FunFam Histidine kinase 4 200 415 - -
Alju12g1962 1091 PANTHER TWO-COMPONENT HISTIDINE KINASE 115 1080 - -
Alju12g1962 1091 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 523 761 IPR036890 -
Alju12g1962 1091 SMART HKATPase_4 581 766 IPR003594 -
Alju12g1962 1091 CDD REC_hyHK_CKI1_RcsC-like 949 1079 - -
Alju12g1962 1091 CDD HisKA 469 530 IPR003661 GO:0000155|GO:0007165
Alju12g1962 1091 Pfam Response regulator receiver domain 949 1079 IPR001789 GO:0000160
Alju12g1962 1091 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 581 763 IPR003594 -
Alju12g1962 1091 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 458 535 IPR036097 GO:0000155|GO:0007165
Alju12g1962 1091 Gene3D - 445 532 - -
Alju12g1962 1091 Gene3D - 533 768 IPR036890 -
Alju12g1962 1091 SUPERFAMILY CheY-like 787 921 IPR011006 -
Alju12g1962 1091 FunFam Histidine kinase 4 441 532 - -
Alju12g1962 1091 CDD HATPase_EvgS-ArcB-TorS-like 586 764 - -
Alju12g1962 1091 Gene3D CHASE domain 200 415 IPR042240 -
Alju12g1962 1091 SMART REC_2 947 1079 IPR001789 GO:0000160
Alju12g1962 1091 SUPERFAMILY CheY-like 947 1084 IPR011006 -
Alju12g1962 1091 ProSiteProfiles Histidine kinase domain profile. 476 766 IPR005467 -
Alju12g1962 1091 Pfam His Kinase A (phospho-acceptor) domain 469 534 IPR003661 GO:0000155|GO:0007165
Alju12g1962 1091 ProSiteProfiles CHASE domain profile. 196 408 IPR006189 -
Alju12g1962 1091 SMART HisKA_10 469 534 IPR003661 GO:0000155|GO:0007165
Alju12g1962 1091 SMART CHASE_2 196 381 IPR006189 -
Alju12g1962 1091 FunFam Histidine kinase 3 942 1087 - -
Alju12g1962 1091 Gene3D - 769 921 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1962 Alju-ChrAlju12 40641754 40648168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1962 110 1091 Histidine Kinase Gene Family AT2G01830 70.071 0.0 1390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju12g1962 HATPase_c 4.9e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g1962 12 40641754 40648168 Alju12g1962 12 40641754 40648168 ECH