Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1961 ATGGAGAAACTCTACTCGAGTTTCAGGGTTTCTTTCTTATGTCGTGTTCTTTTGATTCTTTCCATGTTCTTGTTGGCTAAGTCTCAGGACGCAGCGGTTATGGCCATTCTCAAGAACTCCATCAAGGGGTCGGGTTCCCTCCAATGGTCCGACCCGGATGTCTGCATATGGGCTCACATTCAATGCAATTCTGCGAAACGGGTCACCGCAATTCAGATTGGGAACTTGAACCTGCAAGGCTCTCTGCCAAAGGAACTCTCTCAGCTCACAGAATTACAGCGTTTCGAGTGCCAATCCAACAGTCTTTCGGGGCCATTTCCGTCATTAGCCAGTTCCCTACAACACCTTTACATTTCAGACAACGGATTCACCTCTATGCCTTCAGATTTCTTCAAGGGCATGTCGATGTTAGAAGAAATAAGAATCGACAATAACCCTTTTCCTCCATGGCGAATTCCAGACATACTCAAAGACTGCGTAGCATTAAAAACATTATCGGCGCAAAATGTTTCTTTTGTCGAAGAAATTCCTGATTTTTTCGGCAAAGATGGTCCATTTCCAGGTCTGACTAGATTGACTCTGAGTTTCAATCAACTCGTAGGTGGGTTACCTTCGAGCTTCTCAGGTAGTTTAATAGAGACACTATGGGTGAATGGACAAAAGAGTAATTCTAAACTTAATGGCACACTTGCGGTTTTACAGAGCATGACTTCATTGAAGCAGATTTGGGCTCATGGTAATTCCTTCACTGGTCCGATCCCTGACCTGTCGCACCATGATCAATTGTTCGATGTGAGTTTGAGGGATAACCAGTTAACTGGTGTTGTTCCGTCGTCTCTTATGGCTCTTGTTAGTTTGCAAGTCGTGAATTTTACTAACAACTATCTTCAAGGACCCATGCCTGCGTTTAATTCAGGAGTACGTGTGGATATAGAGGGAATAAATCAGTTTTGCACGACCAAGCCTGGTCAGCCATGTAGTTCTTTGGTGAGTGCTTTATTATCTGTGGTTGAACCTTTGGGTTATCCATTGAAGTTTGCTCAAAGTTGGAAGGGCAATGATCCTTGTGCTGGGAACTGGCTAGGGATTGTTTGTGGAGGTGGAAATATTACTGTTGTGAATTTTCAGAACATGGGCCTTTCTGGGACTGTTTCTCCTACATTTTCCAGACTCACATCAGTAAAAAAGTTGCTTCTTGCTAACAATAATCTCACTAGCACTGTACCTCAGGAGCTTACAAGTATGCCTCATTTGGAGGAGCTGGATATTTCAAATAATCATATATATGGAGTGTTGCCAACATTTCGGAATGGTGTGATTGTTAAATCAGGTGGGAATCCTGATATTGGCAAGGATAAGCCTTCTTCTCCGCCGGGACCTGACTCAAATAATACTTCAGGTAATGGTAAGAAACAGAATTCAAGAATCATTGTTGTTGTTGTTGTGGTGGTGGTGGGGGTTCTCGTTTTACTTGGTGTGCTAGTTTGGGGAGGCATCTGGTTTAACAGAAAAAAGAAGCATTCAAGCAAAATTCAAGTTCCGAATGGCGTAGTGATACATCCTCAGCGTTCTGGAGATAGAAATCACTTGAAAATCAGTGTTGTAGGAGCTGGTTCTAATGCTAATAATGGAGGAGGAACTAATAATGGACATATTACGAGCACTAGTAATGCAGCTGGTGATGTTCATGTGGTGGAAGCTGGTGGTATGGTGATTTCGATTCAAGTTTTAAGAGAAGCCACCAACAATTTCAGTAGAGAGAACATACTGGGGAAGGGCGGTTTCGGCACCGTGTACTTGGGGGAATTGCACGACGGGACGAAGATCGCGGTGAAGAGGATGGAATCTGGAGTGGAGGGTGAGAAGGGGCTGAGTGAATTCAAAGCTGAAATCAATGTACTCACTAGGGTTCGTCATAAGCATTTGGTTGCTCTCATGGGGTATTGCTTAGATGAAAATGAGAGGCTTCTTGTGTATGAGTACATGCCTCAGGGGACTCTAAGTAGACACTTGTTCAACTGGAAAGATGAGGGGTTAAGGCCACTGGAATGGACAAGAAGACTTATCATTGCCTTGGATGTTGCTAGAGGAGTTGAGTATCTTCATGGTTTGGCCCAACAAATTTTCATTCATAGGGATCTCAAACCATCAAACATCCTTCTTGACGATGATATGCGAGCTAAAGTGTCCGACTTTGGATTGGTTCGCCTTGCGCCAGAAGGAAAAGCCTCATTTGAAACCAGACTTGCTGGAACTTTTGGCTATTTGGCACCAGAATATGCAGTAACTGGGCGAGTAACGACGAAGGTTGATGTGTATAGTTTTGGAGTGATTCTTATGGAGATGATAAGTGGGAGGAAAGCACTTGATGACAGCCAAGCTGAAGAGAATGTCCACCTGGTCACATGGTTCCGAAGAATGATGCTGAATAAGGACACATTCCGAAAGGCCATTGATCCAGAAATAGATGCCAATGAGGAAACTCTAGCCAGTATCAAGACAGTTGCAGAGCTGGCCGGCCATTGCTGCGCAAGGGAGCCATATCAGAGGCCGGACATGTGCATCGCCGTGAACGTGCTGGCGCCTCTCGTGGAGGTCTGGAAGCCTGCAGAAGCAAGTTCTTCTGATGACATTGGTGGGATTGATCTTGATATGGACCTTCCTCAAGCTCTTAAAAAATGGCAGGCTTTTGAAGGAATGAGCTATACCACCACCCTGGCCACCAGGGATGCTACTTCCTCATCCTTGATTTCCAGTGCAGAAAGTACACAGTCAAGTATACCTCCAAGGCCATTTGGACTTGGAGCTTCTTTCACTTCTTCAGATGGAAGATGA 2835 0.4459 MEKLYSSFRVSFLCRVLLILSMFLLAKSQDAAVMAILKNSIKGSGSLQWSDPDVCIWAHIQCNSAKRVTAIQIGNLNLQGSLPKELSQLTELQRFECQSNSLSGPFPSLASSLQHLYISDNGFTSMPSDFFKGMSMLEEIRIDNNPFPPWRIPDILKDCVALKTLSAQNVSFVEEIPDFFGKDGPFPGLTRLTLSFNQLVGGLPSSFSGSLIETLWVNGQKSNSKLNGTLAVLQSMTSLKQIWAHGNSFTGPIPDLSHHDQLFDVSLRDNQLTGVVPSSLMALVSLQVVNFTNNYLQGPMPAFNSGVRVDIEGINQFCTTKPGQPCSSLVSALLSVVEPLGYPLKFAQSWKGNDPCAGNWLGIVCGGGNITVVNFQNMGLSGTVSPTFSRLTSVKKLLLANNNLTSTVPQELTSMPHLEELDISNNHIYGVLPTFRNGVIVKSGGNPDIGKDKPSSPPGPDSNNTSGNGKKQNSRIIVVVVVVVVGVLVLLGVLVWGGIWFNRKKKHSSKIQVPNGVVIHPQRSGDRNHLKISVVGAGSNANNGGGTNNGHITSTSNAAGDVHVVEAGGMVISIQVLREATNNFSRENILGKGGFGTVYLGELHDGTKIAVKRMESGVEGEKGLSEFKAEINVLTRVRHKHLVALMGYCLDENERLLVYEYMPQGTLSRHLFNWKDEGLRPLEWTRRLIIALDVARGVEYLHGLAQQIFIHRDLKPSNILLDDDMRAKVSDFGLVRLAPEGKASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKALDDSQAEENVHLVTWFRRMMLNKDTFRKAIDPEIDANEETLASIKTVAELAGHCCAREPYQRPDMCIAVNVLAPLVEVWKPAEASSSDDIGGIDLDMDLPQALKKWQAFEGMSYTTTLATRDATSSSLISSAESTQSSIPPRPFGLGASFTSSDGR 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1961 944 PANTHER OSJNBA0070M12.3 PROTEIN 13 944 - -
Alju12g1961 944 Gene3D Phosphorylase Kinase; domain 1 547 661 - -
Alju12g1961 944 Gene3D Ribonuclease Inhibitor 328 453 IPR032675 -
Alju12g1961 944 Pfam Leucine rich repeat 387 428 IPR001611 GO:0005515
Alju12g1961 944 SMART serkin_6 584 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju12g1961 944 MobiDBLite consensus disorder prediction 913 930 - -
Alju12g1961 944 SUPERFAMILY L domain-like 42 435 - -
Alju12g1961 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672|GO:0006468
Alju12g1961 944 SMART LRR_typ_2 111 133 IPR003591 -
Alju12g1961 944 SMART LRR_typ_2 186 209 IPR003591 -
Alju12g1961 944 SMART LRR_typ_2 415 437 IPR003591 -
Alju12g1961 944 SMART LRR_typ_2 391 414 IPR003591 -
Alju12g1961 944 FunFam receptor protein kinase TMK1 546 661 - -
Alju12g1961 944 Pfam Leucine rich repeat N-terminal domain 331 365 IPR013210 -
Alju12g1961 944 Pfam Leucine rich repeat N-terminal domain 29 63 IPR013210 -
Alju12g1961 944 Gene3D Ribonuclease Inhibitor 27 323 IPR032675 -
Alju12g1961 944 FunFam Leucine-rich repeat receptor-like kinase 328 452 - -
Alju12g1961 944 SUPERFAMILY Protein kinase-like (PK-like) 565 868 IPR011009 -
Alju12g1961 944 FunFam Receptor-like kinase TMK4 28 323 - -
Alju12g1961 944 FunFam receptor protein kinase TMK1 662 879 - -
Alju12g1961 944 MobiDBLite consensus disorder prediction 443 470 - -
Alju12g1961 944 ProSitePatterns Protein kinases ATP-binding region signature. 590 612 IPR017441 GO:0005524
Alju12g1961 944 CDD STKc_IRAK 590 853 - -
Alju12g1961 944 MobiDBLite consensus disorder prediction 913 944 - -
Alju12g1961 944 ProSiteProfiles Protein kinase domain profile. 584 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju12g1961 944 Pfam Protein kinase domain 585 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju12g1961 944 Gene3D Transferase(Phosphotransferase) domain 1 662 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1961 Alju-ChrAlju12 40625733 40628868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1961 68 866 Receptor kinase-like Gene Family AT5G07280 30.096 2.06e-80 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Alju12g1961 Pkinase 1e-47 CL0016