Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1942 ATGGTTTCAAGATCTTACTCAAATCTATTGGACCTAGCCTCTGGTGACTCTCCATCATTTGGGTTTATGAACCGTGGGATTCCCAGGATTATGACTGTGGCTGGTTTGATTTCTGAGGTCGATGACGACCCAGTGGAGAGTGCGAACTCTGATCCCTCGTCATCGGTCCACCGTGAACGGATCATAATAGCGGCCAACCAGCTTCCAATCAGGGCTCAGAAAAAGCCAGATGGTAGTACTAGTAATAGTGGTGGTGGTGGTGGTACTAGGAATTGGTTGTTTCAGTGGGATGATAACTCACTTCTTCTTCAGTTAAAAGATGGATTAGGTGATGATGATATTGAAGTTATTTATGTTGGGTGCCTCAAGGAAGAAATCCACCCAAACGAACAAGATGAGGTCTCACTATTCCTCCTTGAAAATTACAGATGTGTCCCTACCTTTCTCCCTTCTGATCTGTTTTCAAGATACTATCATGGGTTTTGCAAGCAGCAGCTATGGCCTTTGTTTCACTATATGTTGCCTTTGTCACCAGAACTTGGTGGTAGATTCAATAGGTCACTCTGGCAGGCTTATGTATCTGTGAATAAGATTTTTGCTGATCGAATTATGGAAGTGATTAACCCTGAAGACGATTATGTTTGGATCCATGATTATCATCTAATGGTGCTTCCTACATTCTTGAGGAAGAGATTTAACAGAGTGAAACTTGGGTTTTTCCTCCATAGCCCATTCCCTTCCTCAGAAATTTACAAGACATTGCCCATTAGAGAAGAACTACTGAGAGCTCTTTTGAATTCAGATTTGATAGGCTTCCACACATTTGATTATGCACGCCATTTCCTGTCCTGTTGTAGCCGGATGCTGGGGCTTAGCTACGAATCGAAGCGGGGTTATATCGGGCTTGAGTATTACGGTAGGACTGTTAGCATCAAAATTCTTCCTGTTGGTATCCACATGGGTCAGCTTGAACAAGTGTTAAGCCTGACTAAGACAGAAGAGAAAGTTGCTGAGCTCATTCAGCAATTTTCAGGCAGAGGAAGGACATTGATGCTTGGAGTTGATGATATGGATATCTTTAAGGGTATAAGTTTGAAGCTTTTGGCAATGGAACAGCTTCTTATACAACATCCAGAGTGGCAAGGGAAGGTTGTCTTGGTCCAAATTGCGAACCCGGCCCGGGGCAAAGGGAAAGATGTGAAGGAAGTGCAAGCTGAGACAAAGGCAACGGTTAAAAGGATTAATGAAACATTTGGGAAACCTGGGTATGATCCTGTCATTCTGATTGAGGAGCCACTCAAGTTCTATGAGAAAGTTGCGTACTATACCGTTGCTGAGTGTTGTCTAGTCACTGCAGTTAGGGACGGAATGAATCTCATACCGTATGAATACATAATTAGTCGTCAAGGAAATGAAAAATTGGATAAAGTTTTGGGACTATGTTCCTCTCCTAAAAAGAGCATGTTGGTTGTCTCTGAGTTCATAGGTTGTTCCCCATCGTTAAGTGGAGCAATCAGAGTGAACCCATGGAATATTGATGCAGTAGCAGATGCAATGGACTCTGCCCTGGAAATGGCTGATTCAGAGAAACAGCTTAGGCATGAGAAGCATTATAGATATGTTAGTACCCATGATGTTGGTTACTGGGCTCGAAGCTTCTTGCAGGATTTGGAAAGGACTTGTAGTGATCATGTCCGGCGAAGGTGGTGGGGAATCGGGTTTGGATTGGGTTTTAGAGTTGTGGCACTTGATCCAAACTTCAGGAAGCTCTCAATGGAGCACATAGTTTTAGCCTACAAGCGAACAAAAACTCGGGCAATCCTTCTAGATTATGATGGCACACTAATGCCTCAAGCTTCCATTGACAAGAGTCCAACAAGTAAAACTATTGAAATTCTTAGTAGCTTGTGTAGGGACAAGAACAACATGGTGTTTCTTGTTGGTGCTAGGAGCCGCAAAACACTTTCTGAATGGTTTTCTCCTTGTGAAAATCTGGGAATTGCAGCTGAGCATGGCTACTTTCTCAGACTGAAGCGTGATGCAGAATGGGAAACATGTGGACCAGCAACAGACTGTAGCTGGAAACAGATTGCTGAGCCTGTGATGAAGCTTTATACTGAAACAACTGATGGATCCACTATTGAAGATAAAGAGACTGCACTTGTGTGGTGCTATGAGGATGCAGATCCAGATTTCGGGTCATGCCAAGCCAAGGAACTTCTTGATCATCTTGAGAGTGTGCTTGCAAATGAACCTGTCACTGTCAAGAGTGGCCAGAACATCGTAGAGGTTAAACCACAGGGGGTGAGCAAAGGGATAGTGGTGAAGCGCTTGCTTTCGACCATGCAAGAGAATGAGATATCACCTGATTTTGTGTTGTGCATAGGAGATGATAGGTCTGATGAAGACATGTTTGAGGTAATCTCCAGTTCCATGGCTGGTCCCACCCTAGCAGCTAGGGCCGAGGTATTTGCATGCACAGTTGGCCAGAAACCGAGCAAAGCCAAGTATTATCTGGATGACACAGCTGAGATAGTGAGACTGATGCAGGGACTGGCCTCTGTTTCAGAACAAACAGTTCTGGTTTAA 2589 0.4396 MVSRSYSNLLDLASGDSPSFGFMNRGIPRIMTVAGLISEVDDDPVESANSDPSSSVHRERIIIAANQLPIRAQKKPDGSTSNSGGGGGTRNWLFQWDDNSLLLQLKDGLGDDDIEVIYVGCLKEEIHPNEQDEVSLFLLENYRCVPTFLPSDLFSRYYHGFCKQQLWPLFHYMLPLSPELGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLEQVLSLTKTEEKVAELIQQFSGRGRTLMLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGKGKDVKEVQAETKATVKRINETFGKPGYDPVILIEEPLKFYEKVAYYTVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKVLGLCSSPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCSDHVRRRWWGIGFGLGFRVVALDPNFRKLSMEHIVLAYKRTKTRAILLDYDGTLMPQASIDKSPTSKTIEILSSLCRDKNNMVFLVGARSRKTLSEWFSPCENLGIAAEHGYFLRLKRDAEWETCGPATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNIVEVKPQGVSKGIVVKRLLSTMQENEISPDFVLCIGDDRSDEDMFEVISSSMAGPTLAARAEVFACTVGQKPSKAKYYLDDTAEIVRLMQGLASVSEQTVLV 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1942 862 SUPERFAMILY HAD-like 605 852 IPR036412 -
Alju12g1942 862 Gene3D Glycogen Phosphorylase B; 326 542 - -
Alju12g1942 862 NCBIfam HAD-IIB family hydrolase 607 808 IPR006379 -
Alju12g1942 862 Gene3D Glycogen Phosphorylase B; 53 325 - -
Alju12g1942 862 NCBIfam trehalose-phosphatase 603 852 IPR003337 GO:0003824|GO:0005992
Alju12g1942 862 Pfam Glycosyltransferase family 20 89 558 IPR001830 GO:0003824|GO:0005992
Alju12g1942 862 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 853 IPR001830 GO:0003824|GO:0005992
Alju12g1942 862 Pfam Trehalose-phosphatase 608 842 IPR003337 GO:0003824|GO:0005992
Alju12g1942 862 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 561 - -
Alju12g1942 862 CDD HAD_TPP 606 847 - -
Alju12g1942 862 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 734 861 - -
Alju12g1942 862 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 604 721 - -
Alju12g1942 862 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 324 - -
Alju12g1942 862 Gene3D - 604 736 IPR023214 -
Alju12g1942 862 Gene3D - 737 860 IPR023214 -
Alju12g1942 862 FunFam Alpha,alpha-trehalose-phosphate synthase 326 542 - -
Alju12g1942 862 CDD GT20_TPS 60 558 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1942 Alju-ChrAlju12 40448889 40452390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1942 1 862 Trehalose Biosynthesis Gene Families AT1G68020 80.947 0.0 1461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g1942 12 40448889 40452390 Alju12g1942 12 40448889 40452390 ECH