Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1935 ATGGCTGCTTTGCAGAGTGTGACACAGTCAAGCATGACTACTAGTGTAAGCAACTATGGCAGCTGCAGAGGTGGTGGTGCTGCAGCTATTGAGAAGGCGGTTCCTGATCAGTTCCCAGCTGGTCTGAGAGTTCTAGTTGTGGACGATGACATCACTACTTTGAAAATCATTGAACAAATGTCTCTCAAGTGTCATTATCGCGTCACTACATGTTCTGAGGCTATTGTTGCTTTAAATCTTCTGCGAGAAAAGAAAGGCTGTTTTGATGTAGTATTGAGTGACGTTTATATGCCTGACATGGATGGGTATAAGCTCCTAGAACATGTTGGGCTCGAGATGGATCTTCCTGTTATCATGATGTCTGCTGACGGCAGAACAAGTGCTGTGATGAAGGGTATTAGACATGGGGCTTGTGACTATTTGATTAAGCCTGTTCGTGAGGAGGAATTGAGGAACATATGGCAGCACGTTGTTAGGAAAATGTGGAATGAAAACAAAGAACATGAAAATTCTGGCAGCTTGGAAGATAATGATAGGAGTAAACAAGGAAATGATGATACTGAATATGCTTCATCTGTAATTGATGTGGCAGAAGTAGTTAAAGTTCCTAAAAAGAGGATCAGTTCTAAAGAAGATGATGATAGTGAACTGGAGAACGAAGATCCATCCACATCTAAGAAGCCCCGTGTGGTCTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCCGTGAACCAACTTGGGCTTGATAAGGCTGTACCAAAGAGAATTCTCGAACTGATGAATGTCCCAGGTTTGACAAGAGAAAATGTTGCTAGTCATCTGCAGAAATTTAGGCTTTATTTGAAGAGAATAAGTGGAGTGGCACAGCAGCAGAATGGGATTCCAAACACAGCCTCTGGGTCTATGGAATCCAGGCTAGGAGGACTAGGAAGGTTAGACATCCAAGCTCTGGCTGCTGCTGGCCAAGTCCCTCCTCAAACATTAGCAGCCCTTCATGCAGAACTCTTAGGTCGTCCAGCCATGGACCAGACAGCTCTTCTGCAAGCTTCCATACAGGGCCCCAAGCATTCCCCCGCAGAACATGCTGTGGCATATGGTCAGCCTTTGGTAAAATGCCCCTCCAACATTGCCAAGAATTTTCCTCAATCCATCCTTACTGTGGATGACGCCCCTTCAGGCTATGGAGCGTGGCCAACATCTGATACGATTGGTTCAATGGGACCCAATGGTAATCATGGAAGGGTGAGTGTTCAAAATAATAACATGCTGATGGATGTACTGCAGCACCAGCAAAGGCAGCAGTTCCAGCAAACACAGCAGCATAAGCTGCAGCAGCAATCGCTGATGCATGATCAAAGTCGTTCAATCAATGTTCAACCATCTTGCTTGGTAGCTCCCTCTCAAACTTCAGACACTTTCCAGGTTAACGGTCCTGCTTCTGTCAACCAGAATGCCAGTTTGACTAGGAATGCCCTTATAGATTATAGTCTCTTCGCACCCCAATCAAATCATCCTTCATTAAATATTGCTCAATTTCCTGTTGGGGACACCAAAGCTAAAGGTGTTCTTTGTGGATATGTTGCTCCAGGCTCCACCTCGCATTCAGTAAGTGCTAACAATAGCAATACCCAACAGCTTCACAACTCATCTTTGACATTCAGTGCCGTGAGAGCTTTGCCAACTCTTTCAGCAACTGTGTCTGATACGCAAGTTCCCTATGGTGTTACTAAATCCGGTGATCCAATTGATCAAGCTCATGTAAGGAATCTTGGATTTGTTGGCCAAGGTAGCAGTATTCCGAGTCGGTTTGCTGCTCATGAAATTGAATCACCTGTCAGTGACTTAAGTCAGGGAAAAATCCCTCTAGATAGCAATGGTAACACAGTGAAGCAGGAGCCAAGTATGGATTTTATGGATCACTCAAAAGTGGGCGCCCCCATCTTGCAGAGATATCCAGCTGATCCCATGAATGCTGAACTATGGCGAGGAGAAAGTCATTTTCCTCAAAGGTACAGATTATCGAATCATCAGTGGTTTAGTAGAGATTATTTCGTCAAACTAGTTCTGGACTTGTTGGTGCCTGAACCAGATTCGGTTGGATTCTGGAGCTTAATGATGGTTGTGTAA 2130 0.4465 MAALQSVTQSSMTTSVSNYGSCRGGGAAAIEKAVPDQFPAGLRVLVVDDDITTLKIIEQMSLKCHYRVTTCSEAIVALNLLREKKGCFDVVLSDVYMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKMWNENKEHENSGSLEDNDRSKQGNDDTEYASSVIDVAEVVKVPKKRISSKEDDDSELENEDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGVAQQQNGIPNTASGSMESRLGGLGRLDIQALAAAGQVPPQTLAALHAELLGRPAMDQTALLQASIQGPKHSPAEHAVAYGQPLVKCPSNIAKNFPQSILTVDDAPSGYGAWPTSDTIGSMGPNGNHGRVSVQNNNMLMDVLQHQQRQQFQQTQQHKLQQQSLMHDQSRSINVQPSCLVAPSQTSDTFQVNGPASVNQNASLTRNALIDYSLFAPQSNHPSLNIAQFPVGDTKAKGVLCGYVAPGSTSHSVSANNSNTQQLHNSSLTFSAVRALPTLSATVSDTQVPYGVTKSGDPIDQAHVRNLGFVGQGSSIPSRFAAHEIESPVSDLSQGKIPLDSNGNTVKQEPSMDFMDHSKVGAPILQRYPADPMNAELWRGESHFPQRYRLSNHQWFSRDYFVKLVLDLLVPEPDSVGFWSLMMVV 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1935 709 Pfam Response regulator receiver domain 44 153 IPR001789 GO:0000160
Alju12g1935 709 CDD REC_typeB_ARR-like 44 158 - -
Alju12g1935 709 FunFam Two-component response regulator 42 179 - -
Alju12g1935 709 PANTHER TWO-COMPONENT RESPONSE REGULATOR 42 412 IPR045279 GO:0009736
Alju12g1935 709 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Alju12g1935 709 SUPERFAMILY Homeodomain-like 224 284 IPR009057 -
Alju12g1935 709 Gene3D - 42 227 - -
Alju12g1935 709 ProSiteProfiles Response regulatory domain profile. 43 158 IPR001789 GO:0000160
Alju12g1935 709 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 283 IPR017930 -
Alju12g1935 709 Gene3D - 228 286 - -
Alju12g1935 709 MobiDBLite consensus disorder prediction 205 227 - -
Alju12g1935 709 FunFam Two-component response regulator 223 286 - -
Alju12g1935 709 SMART REC_2 42 154 IPR001789 GO:0000160
Alju12g1935 709 MobiDBLite consensus disorder prediction 167 185 - -
Alju12g1935 709 SUPERFAMILY CheY-like 41 166 IPR011006 -
Alju12g1935 709 MobiDBLite consensus disorder prediction 167 188 - -
Alju12g1935 709 Pfam Myb-like DNA-binding domain 229 277 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1935 Alju-ChrAlju12 40372425 40376971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1935 76 342 Response Regulator Gene Family AT3G16857 55.749 6.43e-94 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Alju12g1935 Response_reg 1.5e-20 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g1935 12 40372425 40376971 Alju12g1935 12 40372425 40376971 ECH