Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1918 ATGGCTGCTATCCATTTCTTCAAGATTATTCTTGAACATTCTCTTCAAGAAGGAAGGCTTAAAGTACCAGACAACTTTATACGAAAATATGGAGGTACTATGCAAAATCCAGTGTATCTGAAGCCTCCAGATGGGACTGAATGGGAAATACATTGGACAAAATATGAAAGTTGTGAGGTTTGGTTTGAGAAGGGCTGGGATGAAGTTGTTAGATACTACTCTTTAGGTCATGGCCATTTGGTGCTGTTCAAATATGAGAGAACTGAAAGAACTTGTGACTTTAAAGTGAACATTTTTGACAAGAGTGCATTAGAAATAGACTACCCTCTTCACAGAAACCTCCTACAAATTAATGATGATTCTGTTTCAATTGAAATCTTGCATGAGAAACCTTCTGTGCATAAAGTAGCCAGCCCAAAACCGCCATTATTATCATCCTCATTTCGCCCTTGCAAGAAAATTAGAGCTGAAGAAGCTGAAAGGGCCTATAATCAGCAAAAGAAGCATTCAAATGGGAACAAGCTTAAGCCCATTAAAGCAGAACCGAATCTTGTCAAGCTTGAATCAGAAGGAACCGTGGGCAAAAGCAATTTTTCCACTAAAAAAATTTCAAAATCCATGGCTATCAAAAAAGGAAAGGAGAAACCACTAACTTGTGATGAGAAGGAAAGAGCCTTACAGAGAGTCAACACTTTCACGGCCAAAAATCCCTATTTCAAAATTGTCATGCAGCCAGAATACATCAGTAACCGTTTGTGTGTACCAGCAAGTTTTGTGAAACAGAATTTGAAGCAGAAGGGTGAGATTGCTGTCCTCCTCCGGGTTTCGGATGGCAGAACTTGGCGTGTGAAGTGCTATAGGGAAGAAAGAAATCAGAACAAGTTCCGACTCAAAAGTGGGTGGCTCTCTTTTGTACAAGACAATAACTTGAAAGTGGGTGATGTGTGTGTTTTTGTACTCACAAACCGCATTGACATCTCCTTCCTAGTTCATGTTTTTGGAGGTTCTGCTAATCCATATGGCTAA 1026 0.3967 MAAIHFFKIILEHSLQEGRLKVPDNFIRKYGGTMQNPVYLKPPDGTEWEIHWTKYESCEVWFEKGWDEVVRYYSLGHGHLVLFKYERTERTCDFKVNIFDKSALEIDYPLHRNLLQINDDSVSIEILHEKPSVHKVASPKPPLLSSSFRPCKKIRAEEAERAYNQQKKHSNGNKLKPIKAEPNLVKLESEGTVGKSNFSTKKISKSMAIKKGKEKPLTCDEKERALQRVNTFTAKNPYFKIVMQPEYISNRLCVPASFVKQNLKQKGEIAVLLRVSDGRTWRVKCYREERNQNKFRLKSGWLSFVQDNNLKVGDVCVFVLTNRIDISFLVHVFGGSANPYG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1918 341 CDD B3_DNA 5 100 IPR003340 GO:0003677
Alju12g1918 341 Gene3D - 217 335 IPR015300 -
Alju12g1918 341 ProSiteProfiles B3 DNA-binding domain profile. 5 102 IPR003340 GO:0003677
Alju12g1918 341 SMART B3_2 239 336 IPR003340 GO:0003677
Alju12g1918 341 SMART B3_2 6 102 IPR003340 GO:0003677
Alju12g1918 341 Pfam B3 DNA binding domain 239 333 IPR003340 GO:0003677
Alju12g1918 341 Pfam B3 DNA binding domain 7 101 IPR003340 GO:0003677
Alju12g1918 341 SUPERFAMILY DNA-binding pseudobarrel domain 5 109 IPR015300 -
Alju12g1918 341 PANTHER B3 DOMAIN-CONTAINING 4 331 - -
Alju12g1918 341 SUPERFAMILY DNA-binding pseudobarrel domain 233 334 IPR015300 -
Alju12g1918 341 Gene3D - 2 103 IPR015300 -
Alju12g1918 341 CDD B3_DNA 237 333 IPR003340 GO:0003677
Alju12g1918 341 ProSiteProfiles B3 DNA-binding domain profile. 237 336 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1918 Alju-ChrAlju12 40208856 40210411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1918 1 333 B3 DNA Binding Superfamily AT3G18990 29.888 4.04e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju12g1918 B3 3.9e-20 CL0405