Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1917 ATGGCTGCTTGTTGTCACCTACGTACTGCTATCCATTTCTTCAAGATTATTCTTGAACATTCTCTTCAAGAAGGAAGGCTTAAAGTACCAGACAACTTCATACGAAAATATGGAGGAAATATGACAAATCCAGTGTATCTGAAGCCTCCAGATGAAACTGAATGGGAAATACAATGGACTAAATATGAAAGCGGTGAGGTTTGGTTTGAGAAGGGTTGGGATGAAGTTGTTAGATACTACTTTTTAGGTCATGGCCATTTGGGGCTGTTCAAATATGAGAGAACTGAAAGAACTTGTGACTTTAAAGTGAACATTTTTGACAAGAGTGCATTAGAAATAGACTACCCTCTTCACAGAAATCTCCCACAAATGAATGATGATGATTCTGGTTCAATTGAAATCTTGCATGAGAAACCTCCTCTGCATAAAGTAGCCAGCCCAAAACCGCCATTATTATCATCTTCATTTCGCCCTTGCAAGAAAACTAGAGCTGAAGAAGCTGAACGGACGTCTCATCAGCAAAAGAAGCACTCACATGGGAATGAGCTTAAGTCCATTAAAGCAGAACCGAATCTTATCAAGCTTGAATCAGAAGTTTCTGCAGAAACCGTGGGTAGAAGCAACTTTTCCACCAGAAAAAGTTCAAAATCCATGGCTGTTAAAAAACGGAAGGAGAAACCATTAACTTGGGACGAGAAGGACAGGGCTTTACAAAGAGTCAACACTTACACGCCCAAAAATCCCTATTTCAAAATTGTCATGCATACAGCATACATCAAGAGTTGTTTGAATGTACCAGCAAATTTTGTGAAACAGAATTTGAAGCAGAAGAAGGAAGGAGGTGTCCTCCTGCAGGTTTCAGATGGTAGAACTTGGCGTGTCAAGTGCAATAGGGAAGTAGGAAAGCAACACAAGTTTCGCCTCACGAATGGTTGGTCCTCTTTTGCAAAAGACAATAACTTGAAAGTGGGTGATGTGTGTGTTTTTGAACTCACAAACCCCATCGATATCTCCTTCCAAGGTCATGTTTTTGGAGATTGTGCGAGTCCGTATGGCTGA 1059 0.406 MAACCHLRTAIHFFKIILEHSLQEGRLKVPDNFIRKYGGNMTNPVYLKPPDETEWEIQWTKYESGEVWFEKGWDEVVRYYFLGHGHLGLFKYERTERTCDFKVNIFDKSALEIDYPLHRNLPQMNDDDSGSIEILHEKPPLHKVASPKPPLLSSSFRPCKKTRAEEAERTSHQQKKHSHGNELKSIKAEPNLIKLESEVSAETVGRSNFSTRKSSKSMAVKKRKEKPLTWDEKDRALQRVNTYTPKNPYFKIVMHTAYIKSCLNVPANFVKQNLKQKKEGGVLLQVSDGRTWRVKCNREVGKQHKFRLTNGWSSFAKDNNLKVGDVCVFELTNPIDISFQGHVFGDCASPYG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1917 352 CDD B3_DNA 248 333 IPR003340 GO:0003677
Alju12g1917 352 PANTHER B3 DOMAIN-CONTAINING 10 332 - -
Alju12g1917 352 ProSiteProfiles B3 DNA-binding domain profile. 12 109 IPR003340 GO:0003677
Alju12g1917 352 Gene3D - 7 110 IPR015300 -
Alju12g1917 352 MobiDBLite consensus disorder prediction 143 182 - -
Alju12g1917 352 Gene3D - 228 346 IPR015300 -
Alju12g1917 352 CDD B3_DNA 12 107 IPR003340 GO:0003677
Alju12g1917 352 SUPERFAMILY DNA-binding pseudobarrel domain 243 335 IPR015300 -
Alju12g1917 352 MobiDBLite consensus disorder prediction 207 227 - -
Alju12g1917 352 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
Alju12g1917 352 SMART B3_2 13 109 IPR003340 GO:0003677
Alju12g1917 352 SMART B3_2 249 343 IPR003340 GO:0003677
Alju12g1917 352 ProSiteProfiles B3 DNA-binding domain profile. 248 343 IPR003340 GO:0003677
Alju12g1917 352 MobiDBLite consensus disorder prediction 159 182 - -
Alju12g1917 352 Pfam B3 DNA binding domain 250 332 IPR003340 GO:0003677
Alju12g1917 352 Pfam B3 DNA binding domain 14 108 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1917 Alju-ChrAlju12 40193605 40195144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1917 13 344 B3 DNA Binding Superfamily AT3G18990 28.775 3.94e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju12g1917 B3 3.2e-09 CL0405