LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju12g1849	ATGAGATCCGCATATTTGCAGCTGAATACAATGATTGACGAAGATTTTTTCGCCGAGTATGGGGAGGCAAGTCAGTACAAAATTCTGGAAGTTATTGGCAAGGGTAGCTATGGTGTTGTTGCATCTGCAGTTGATAGACACAGTGGAGAGAGGGTAGCTATCAAGAAGATGAACAATGTATTTGAAAATATCTCTAGTGCCATTCGCATCCTTTGGGAAATAAAGCTCCTTCGGCTGCTCAAACATCCAGATATAGTAGAAATAAAGCACATAATGCTCCCTCCATGCCAAAGAGAATTTAAAGACATTTATGTGGTGTTCGAGTTAATGGAATCTGATCTTGATGAGGTTATTGAAATAAACCATGATCTCACCCCTGGACACTGCCAATTCTTCTTGTACCAGCTTCTTCGAGCTCTAAAATACATACATTCAGCGAATGTCTTCCACAGAGACTTGAAACCAAAGAACATTCTGGCTAATGCAGACTGCAAACTAAAGATTTGTGATTTTGGGCTTGCCCGCGCATCATTTGATGATGCCCCATCTGCTATTTTTTGGACAGATTATGTGGCAACTCGATGGTACCGTGCTCCTGAACTATGTGGCTCTTTTTTCTCCAAGTACACCCCTGCCATAGATATCTGGAGCATAGGATGTATTTTTGCCGAAATGCTAACTGGGGAGCCCTTATTTCCTGGAAAGAATGTGAAGCATCAATTGGATCTCATGACTGATTTGCTTGGAACTCCTTCTGCTGAATGCATTGCAAGGATTAGGAATGAAGAAGCTAGAACATATTTAAATAGCATGGGGAGAAAGCCATCCATTCCTTTGTCAGAAAAAATTCCTCATGCAGACCCTATGGCTCTTTCTTTACTTCAGCGCTTGCTTGCGTTTGATCCTATGGAGCGTCCATCTGCTGAAGAGGCACTAGCTGATCCCTATTTTCAAGGGTTGGCAAATTTGGCTGATGAACCATCCATGAAACCAATTTCAAAGTTTGAGTTCAAGTTTGATTGTAAAAAATTGACCAAAGACGATGTAAGAGAACTAATATATAGAGAGATTTTAGAATATCATCCAGAGATGCTGCGGGAGTATGTTCATGGTGCTGGGAAGACTAGCTTTATGTATCCCAGTGGACTTGATGGCTTCAAGCACCAATTTGCTGATCTTGAGGAAAATAACAGAAGAGTAGAAAGAAGCACGCGCAGAGCAGAAAGAAGAACACTGCTTTATAGGAAATATGCCTCATTGCCCAGGGAGCGGGTTTGTGCAGCCAATGAAGAGGAGGAGGAGGAGGAAACGGACAGAAATTCACATAAGAAGGACAATGCAGCTTCTGTTGTGCGTGCAACAATTCTGAGTCCTCCTAGGTCCCGGAATGGTAAAGAAATGGAAGATGCTCGCCGGAAGTCAATAATAATGCAGAACAACCGATGCAATACAGCTTACAAGGGTCATAGAATTGTAAAGAGTGCTAGTATGAATATGTCTGCAGTTGTTATGGATCCAAAACCAGGAAGTAAGTTTTAA	1539	0.4185	MRSAYLQLNTMIDEDFFAEYGEASQYKILEVIGKGSYGVVASAVDRHSGERVAIKKMNNVFENISSAIRILWEIKLLRLLKHPDIVEIKHIMLPPCQREFKDIYVVFELMESDLDEVIEINHDLTPGHCQFFLYQLLRALKYIHSANVFHRDLKPKNILANADCKLKICDFGLARASFDDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGEPLFPGKNVKHQLDLMTDLLGTPSAECIARIRNEEARTYLNSMGRKPSIPLSEKIPHADPMALSLLQRLLAFDPMERPSAEEALADPYFQGLANLADEPSMKPISKFEFKFDCKKLTKDDVRELIYREILEYHPEMLREYVHGAGKTSFMYPSGLDGFKHQFADLEENNRRVERSTRRAERRTLLYRKYASLPRERVCAANEEEEEEETDRNSHKKDNAASVVRATILSPPRSRNGKEMEDARRKSIIMQNNRCNTAYKGHRIVKSASMNMSAVVMDPKPGSKF	512

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju12g1849	512	Gene3D	Phosphorylase Kinase; domain 1	42	363	-	-
	Alju12g1849	512	Pfam	Protein kinase domain	26	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju12g1849	512	FunFam	Mitogen-activated protein kinase	112	340	-	-
	Alju12g1849	512	SUPERFAMILY	Protein kinase-like (PK-like)	23	322	IPR011009	-
	Alju12g1849	512	ProSitePatterns	Protein kinases ATP-binding region signature.	32	56	IPR017441	GO:0005524
	Alju12g1849	512	Coils	Coil	383	410	-	-
	Alju12g1849	512	SMART	serkin_6	26	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju12g1849	512	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	25	389	-	-
	Alju12g1849	512	CDD	STKc_TDY_MAPK	25	362	-	-
	Alju12g1849	512	ProSiteProfiles	Protein kinase domain profile.	26	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju12g1849	512	Gene3D	Transferase(Phosphotransferase) domain 1	112	340	-	-
	Alju12g1849	512	FunFam	Mitogen-activated protein kinase	15	119	-	-
	Alju12g1849	512	MobiDBLite	consensus disorder prediction	426	445	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju12g1849	Alju-ChrAlju12	39492172	39496182	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju12g1849	12	512	MAP Kinase Gene Family	AT3G18040	66.996	0.0	661

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Alju12g1849		Pkinase	8.7e-67	CL0016