Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1838 ATGGCTGTTACACCTATAAGCACTTCCAGCTTGGAATTGACCATTTCTGTCCCTGGTTTTGCCTCTTCTCCTCCTCTTCCCTCATCTGCAGTGAGAGAGCTAGACATAAACCAAGTACCGTCAACAGAAGAGGAATGGATAACAATGGAGGAAGAAGAAGAAAGCAGCAATGGAGGAGGAGGTCCTCGTAAGAAACTCCGTCTTACCAAGGAACAGTCTCATCTCCTCGAGGACAGCTTCAGACAAAACCACACTCTCAACCCAAAGCAGAAAGAATCATTGGCAAAGCAGTTGAACCTGCGAGCCAGGCAGGTGGAAGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGCGAGTACCTGAAGAGATGGTTCGGATCGCTGACTGAACAGAACAGAAGGCTGCACAAGGAAGTGGAGGAGCTCAGGGCCATGAAGGTGGGGGCCCCCACCGTGATCTCCCCCCACAGTTGCCACCCACTTCCGGCGTCAACTCTAAGCATGTGTCCTCGCTGCGAGAAGGTCACCACCAACACCGCTGTTGTCGCCGCTCCCGACAAGGGCCCCACCTTCACGCACTAA 603 0.5323 MAVTPISTSSLELTISVPGFASSPPLPSSAVRELDINQVPSTEEEWITMEEEEESSNGGGGPRKKLRLTKEQSHLLEDSFRQNHTLNPKQKESLAKQLNLRARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLHKEVEELRAMKVGAPTVISPHSCHPLPASTLSMCPRCEKVTTNTAVVAAPDKGPTFTH 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1838 200 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 40 189 - -
Alju12g1838 200 SMART HOX_1 61 123 IPR001356 GO:0003677
Alju12g1838 200 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Alju12g1838 200 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Alju12g1838 200 SUPERFAMILY Homeodomain-like 53 120 IPR009057 -
Alju12g1838 200 Coils Coil 132 152 - -
Alju12g1838 200 Pfam Homeobox associated leucine zipper 119 153 IPR003106 GO:0006355|GO:0043565
Alju12g1838 200 Pfam Homeodomain 63 117 IPR001356 GO:0003677
Alju12g1838 200 CDD homeodomain 62 120 IPR001356 GO:0003677
Alju12g1838 200 SMART halz 119 162 IPR003106 GO:0006355|GO:0043565
Alju12g1838 200 FunFam Homeobox-leucine zipper protein 18 47 124 - -
Alju12g1838 200 MobiDBLite consensus disorder prediction 15 65 - -
Alju12g1838 200 Gene3D - 47 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1838 Alju-ChrAlju12 39399325 39402701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1838 31 183 Homeobox Transcription Factor Family AT1G70920 65.823 1.50e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju12g1838 Homeodomain 2.9e-17 CL0123