Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1777 ATGGCCAAAAAGGCCGACTCCACAGTCAACAATAACCGGTTGAAGCGCAAGGGTGCTGGAGTTGGAAGGAAGAGACAAAAGGCTGCAAAGGATCCAAACAAGCCAAAGAGGCCTCCGAGCGCTTTCTTTGTGTTTATGTCTGAGTTCAGAGAGCAGTATAAGAAGGAACATCCAGACAATAAATCAGTCACTACTGTTGGTAAAGCCGGCGGTAATGAATGGAAGGCCATGTCTGATGCTGATAAAGCTCCCTACGTTGCCCAGGCAGAGAAGAAGAAGGCGGAATATGAGAAAACTATTAAAGCGTACAATATGAGATTGGCTGAGGGCTTAAATTCAGAGGAAGCTGAGTCTGATAAATCAAAGTCAGAAGTCAATGACGATGATAATTATGATAACCAAGAGGAGGAAGAGGTGGACTAG 423 0.4492 MAKKADSTVNNNRLKRKGAGVGRKRQKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPDNKSVTTVGKAGGNEWKAMSDADKAPYVAQAEKKKAEYEKTIKAYNMRLAEGLNSEEAESDKSKSEVNDDDNYDNQEEEEVD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1777 140 SMART hmgende2 34 105 IPR009071 -
Alju12g1777 140 MobiDBLite consensus disorder prediction 109 140 - -
Alju12g1777 140 CDD HMG-box_AtHMGB1-like 36 96 - -
Alju12g1777 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 7 136 IPR031061 -
Alju12g1777 140 Coils Coil 86 106 - -
Alju12g1777 140 MobiDBLite consensus disorder prediction 112 128 - -
Alju12g1777 140 Gene3D High mobility group box domain 20 107 IPR036910 -
Alju12g1777 140 Pfam HMG (high mobility group) box 35 104 IPR009071 -
Alju12g1777 140 SUPERFAMILY HMG-box 21 106 IPR036910 -
Alju12g1777 140 MobiDBLite consensus disorder prediction 1 41 - -
Alju12g1777 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 35 104 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1777 Alju-ChrAlju12 38872393 38874420 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Alju12g1777 HMG_box 2e-23 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g1777 12 38872393 38874420 Alju12g1777 12 38872393 38874420 ECH