Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1766 ATGATTAACGTTTGGCTTGTGATGTTAATGATTCTCTCTAATGGGCTTTCTTCATCTGGAGCGGCCACGAATAATTCAGCATTACCTGAGTTTGTAAATATTGGAGCGCTCTTCTCTTTCAATACCACCGTAGGTAAAATTATAAAAATAGCTATTGGAACAGCAGTTGCAGATATAAATTCCGATCCTTCCATTCTTGGAAAAACTAAGCTGAGGGTCTCAATGCAAGAGGACTCCAAATATAGAGGTTTTCTGAGCATTTCTGAGGTCTTGCAGCTCATGGCAAGTCACACTCTGGCAATAATTGGTCCCCAGTCATCTGTAACAGCTCATGTCATATCTCATGTTGCAAATGAGCTCCAAGTTCCACTTCTATCATTTTCAGCCACAGACCCTACACTTTCTTCACTTCAATTCCCATTCTTTGTTAGAACTGCACCTAGTGATGTTTATCAGATGGCTGCAATTGCTGAGCTTGTAGACTTCTATGGGTGGAGAGATGTTATTGCAATTTATGTCGACGATGACCATGGGAGGAATGGAATTGGTTCCTTAGGGGATAAGCTTGCAGAGAGACGTTGTAAAATCTCATATAAAGCGCCAATAAGCCCTGAAGCAACTAGGGAGGAGATTACTGATGTGCTTGTTCAGGTGGCTCTTGCTGAATCTCGGATTATAATTCTTCACCCTAATGCTAAATGGGGCCCCCAGGTGTTTGATGTGGCAAAATATCTTGGGATGATGGGAACTGGGTATGTTTGGATAGCCTCCAGCTTTCTCACTACTATTCTGGACTCTGAGAGTCCCATCCCTTCAGATCAAACAGATAAAATTCAAGGAGTTCTTACACTGCGCATGCACACACCTGATTCAGAGCTCAAGAGAAGGTTCTTTTCTAGGTGGAAAAACTTGACTGGGGGAATGACTACTGATAGTCTACTTGGATTGAACACTTTTGGTCTCTATGCATATGATACAGTTTATATGCTTGCTCGTGCACTTGATACATTTTTCAAACAAGGGAACCGAATCACATTCTCAAATGATTCAAAGTTATCTCAACTACGTGGAGACAGCCTGCATCTTGATGCAGTGGACATCTTTGATCAAGGGAATCTGTTGCGTACAAGTATCTATGGGGTTAACATGACTGGGGTAACAGGTCATATTAAATATGCAGCTGATGGCAATCCTATGAATCCATCATATGAAATCATCAATGTGATAGGAACTGGTTTAAGGAGGATTGGTTATTGGTCTAATCACTCTGGATTATCTGTTGATCCTCCAGAAGTTCTTTATTCAAAACCAGCCAATCGTTCCAGTGCAAATCAAAAGCTACACCCTGTAATATGGCCTGGAGAAACAACCCAGAAGCCCCGTGGTTGGGTTTTTCCAAACAATGGAAGGTTCTTAAGAATTGGAGTGCCAAAAAGGGTTAGTTACCGATCATTTGTCTCACAAATTCCAGGCACTGACATGTTCAAGGGATTCTGTATTGATGTATTCCTTGCTGCAGTGAACTTACTGCCCTATGCAGTTCCTTATAAGTTCATTCCATTTGGGGATAGTCACAGCAATCCTAGTAACACCGAGCTTGTTCGTTTAATCACAGCTGGCGTCTTTGATGCTGCAGTGGGTGACATAACGATTACAACAGAAAGAACGAAGATGGTGGATTTTACTCAGCCGTATATGGAGTCTGGTCTAGTAGTTGTAGCACCTGTTAAGAAGGAAGAATCCAGTGCATGGGCTTTTTTGAAGCCATTTACGCCGATGATGTGGTGTGTCACAGCAGTTTTCTTCTTAGTCGTGGGGGCTGTTGTTTGGATCTTGGAGCATAGGCTGAATGATGATTTTCGAGGACCTCCCAAAAAGCAAGTTGTGACAATTTTGTGGTTTAGCTTTTCAACTATGTTCTTCGCTCACAGGGAAAATACAGTGAGCACACTTGGTCGCTTCGTGCTCCTTGTATGGCTATTTGTGGTTCTCATAATTAATTCAAGTTACACAGCAAGTCTGACCTCAATCCTCACAGTACAACAGCTTTCTTCCCCCATTAAAGGCATTGAAAGTTTAGTAAACAGCAAAGAACCCATCGGCTACTTGCAGGGTTCTTTCACTCGAGGTTACTTAATTGAGGAACTTGGCATTCATGAATCAAGACTCGTTCCTATAAAAACAGGTATTGAGACTGCTAAAGCATTAAAAGATGGTCCCAAAAAAGGTGGTGTTGCTGCATATGTCGATGAGCGTGCTTACATTGAGCTCTTCCTTTCAAGCCAGTGTGATTTTACTATTTTAGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCATTTCCTAGAGACTCTCCTTTAGCAGTTGACCTTTCAACAGCCATTCTAGAACTGGCAGAAAATGGAGATCTTCAAAGGATCCATGACAAATGGCTTTTGAAAAGCGCATGCCTAGCACAAGGTGCTAAGCTTGAAGTGGACAGACTTGATCTTAAATCCTTCTGGGTCCTCTATTTGGTTTGTGGACTAGCCTGCTTGGTTGCTCTCCTCATCTATCTCATACAGATGGTGAGACAATACTCCAAACACTACTCTGATGAAATCGAGTCTTCCGGCAGCCGGAGCTCGATGTCCTCACACCTCCGGACTTTCCTAACATTTGTGGACGAGAAAGAGGAGGAAGTTAAGCATCGGTCCAAGAGAAGGCAGCTCGAAAGGATCTCGTACCGAAGCAGCAGCAGTATTGCGGGTGGATCGTTGTCATCATCAACCATATACTCCAACAAAGAATATGCTCAATCCTCTTCAAACAAAAGCGTGGATTGCCTTACTTTTATCCCACTAATTGGGATTGGAACTGAAAATGGCTAG 2871 0.426 MINVWLVMLMILSNGLSSSGAATNNSALPEFVNIGALFSFNTTVGKIIKIAIGTAVADINSDPSILGKTKLRVSMQEDSKYRGFLSISEVLQLMASHTLAIIGPQSSVTAHVISHVANELQVPLLSFSATDPTLSSLQFPFFVRTAPSDVYQMAAIAELVDFYGWRDVIAIYVDDDHGRNGIGSLGDKLAERRCKISYKAPISPEATREEITDVLVQVALAESRIIILHPNAKWGPQVFDVAKYLGMMGTGYVWIASSFLTTILDSESPIPSDQTDKIQGVLTLRMHTPDSELKRRFFSRWKNLTGGMTTDSLLGLNTFGLYAYDTVYMLARALDTFFKQGNRITFSNDSKLSQLRGDSLHLDAVDIFDQGNLLRTSIYGVNMTGVTGHIKYAADGNPMNPSYEIINVIGTGLRRIGYWSNHSGLSVDPPEVLYSKPANRSSANQKLHPVIWPGETTQKPRGWVFPNNGRFLRIGVPKRVSYRSFVSQIPGTDMFKGFCIDVFLAAVNLLPYAVPYKFIPFGDSHSNPSNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPYMESGLVVVAPVKKEESSAWAFLKPFTPMMWCVTAVFFLVVGAVVWILEHRLNDDFRGPPKKQVVTILWFSFSTMFFAHRENTVSTLGRFVLLVWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLVNSKEPIGYLQGSFTRGYLIEELGIHESRLVPIKTGIETAKALKDGPKKGGVAAYVDERAYIELFLSSQCDFTILGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLKSACLAQGAKLEVDRLDLKSFWVLYLVCGLACLVALLIYLIQMVRQYSKHYSDEIESSGSRSSMSSHLRTFLTFVDEKEEEVKHRSKRRQLERISYRSSSSIAGGSLSSSTIYSNKEYAQSSSNKSVDCLTFIPLIGIGTENG 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1766 956 Pfam Receptor family ligand binding region 51 410 IPR001828 -
Alju12g1766 956 FunFam Glutamate receptor 148 300 - -
Alju12g1766 956 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 888 IPR015683 -
Alju12g1766 956 SUPERFAMILY Periplasmic binding protein-like II 449 815 - -
Alju12g1766 956 CDD GluR_Plant 470 812 - -
Alju12g1766 956 Pfam Bacterial extracellular solute-binding proteins, family 3 485 813 IPR001638 -
Alju12g1766 956 Gene3D - 741 781 - -
Alju12g1766 956 Gene3D - 782 812 - -
Alju12g1766 956 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Alju12g1766 956 FunFam Glutamate receptor 467 583 - -
Alju12g1766 956 Gene3D - 50 400 - -
Alju12g1766 956 Gene3D - 148 425 - -
Alju12g1766 956 PIRSF IGluLR_plant 1 942 IPR017103 -
Alju12g1766 956 Pfam Ligand-gated ion channel 814 845 IPR001320 GO:0015276|GO:0016020
Alju12g1766 956 FunFam Glutamate receptor 709 816 - -
Alju12g1766 956 SUPERFAMILY Periplasmic binding protein-like I 26 464 IPR028082 -
Alju12g1766 956 Gene3D - 583 707 - -
Alju12g1766 956 Gene3D - 456 582 - -
Alju12g1766 956 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Alju12g1766 956 FunFam Glutamate receptor 583 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1766 Alju-ChrAlju12 38786202 38792140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1766 5 913 Ion Channels AT3G51480 60.373 0.0 1170
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2479 09 47629558 47632782 Alju12g1766 12 38786202 38792140 CCT
Alju12g1766 12 38786202 38792140 Alju12g1766 12 38786202 38792140 ECH
Alju12g1766 12 38786202 38792140 Alju09g2479 09 47629558 47632782 ECH