Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1763 ATGGTAGCTGGTACGCAGCAGCAACAACAACATCAGCCTCAACCTCAACCTCAATCGCAGCAACAGACTCAGCAAACTACAACCTCTGCGCAAGATGAGGCCTTAAAGAGGAACACGGATTGCGTCTACTTTCTTGCTTCTCCATTGACATGCAAAAAGGGAAGTGAATGTGAGTATCGCCATAGTGAGTATGCTCGGGTCAATCCCCGAGATTGTTGGTATTGGTTGAATGGCAATTGCTTGAATCCCAAATGTGCCTTCCGTCATCCACCTCTTGATGGCTTCTTATCGCCACAGGCAGCCACTGCCGGCGGATCATCTGCACCCCAATCACAGACTGCACCAACTTCTGTACCACATGCACCTTATAATTCTACAAAGCAAGCTGTCCCTTGCATTTTCTTCCAGAAAGGGCTTTGCTTAAAAGGTGACCGATGTGCTTTTTTGCATGGACCAAATCCTAACACCAGTAATAAAGTTCCTCAGGTTCAGGTGACTAACCAGGTTACTGAGCCTCCAAGTTTTAAGAAGGTTTTTAGTGGCCCAGAAAAGTCAACACAAGAAAGGAAAATTTCCCAAGCAAATGTTGCAAAGCCAGTTGCAATTGCAGGAGATGAAGCTAAGCCTGCCCAAAAGGCTGAAACTGCTTCGCATAGAAATATAGCTGCCATAGAGAGGTATGCACCACAACCAATGGGATTTGATAACGAGGCGTCTAGATTCAAGGTAGTAAATACTCCACCTGTCACCAATGGGACCACTGTTGCCAGGCCAAACCGGGTGTATCAATCTCATGCATCAGATGATCATAGTTTCCACAATGGCAAGGAAAGTGATGAATTCTTGAGAGAATCCTCACCGGGCTTTGATGTACTTGTAGAAGATGAACTGAGGAATTCAGATTACTATGATGGAGAGGACCAATATGGAAAAGCAAGAGGTCAAGACAGCATGAACTTGGACTCTGTGAATGAATATGATTTAGGACATTCTGTAGATTATAAATCTGTAGCTGATATTGACCAAGAAAGATATTGTGGGCCACAAGGTTATGACTCGTATGACCACATGCAAGAGACATATGAATGGGATCATCGCAGGAGTTCATCTGAAAGAATGTTCCGGGCAACAACCCATGTAGATAGGATGATTCATGGCAGATCTGGAAGTCCTGAAAATGTTGGGGTTTCAGATCTTCGACATCGTTTATCTAAGCGTAGGAGGGTCAATGGTTTGAAATCTGTTGTGAGTCATGATTATGCACGTCAGAGCCATGATGATGAGCAAAGTCACCGATTCTCTTCTCAAAAGGATACTCACCAGTTACCCTTGAATGAAAGCGCACTCGGTAATCGCTTCCGAGGCAGGATTAAGCTTCCGGCAAATGGTGGTGAAGAATATGTGGAGAGGGAATCAGACAGGGGAAGAAATAGAAGGGCGTTGTCACCTGGAACTATGCAGGATCCTCATCACCCAGGTAGGTTCCGAGATAGATTGAGAGGAAGGGTGCAAGAAGATTTTGAGAGGAAAAACTTGGGGGATCGACCTATGAGGAGAGAAATAAATGGGGACCAAGATGCTGATTTTGATGGACCAAAAAGTCTTGCTGAACTGCGAAATGGAAACAATAGTAAGAATAAGGAGCATCAGTTGCTTGGGAAGAGGAAAAGCTTAAAGGAACAACAACAATCTGAAGATGATTTCATGTTTGAAGGTCCAAAACCTCTTAGTGAGATTTTGAAGGAGAAGAAGGCGGCAACTGGCAAATCGTCTGAGAATAAAGAAGACAATAAAGACAGAGAAGTTACCAATGGTTCGGAAGACACCTCTGTTACAGATGCACAAAATGGCACTTCGCCTGCAAATAAGGAAGATGTGAAGAACCAGGAATCCAAGTTTCAGGCAATAGAGAACGCGGTTGAAAGTGATACAGCCAAGACAGATGTAACTCATGATCAATCATTTGAAGAAGGAATGATGGACAACGAAGTAGTAGAAGACCAGGTGTATGAAGGTGACGATCAGAAGGATGGTGATTATTACTATGAGCAAGTTGAGGAGGGAGACTACAATTTTGATGAAGGTGAAAATCCAGAGCAGGAAGAATACATGGATGATGAGGAGGACGGGGATGATTTCGCTAAGAAGATTGGTGTGATGCTCACATGA 2169 0.4398 MVAGTQQQQQHQPQPQPQSQQQTQQTTTSAQDEALKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWYWLNGNCLNPKCAFRHPPLDGFLSPQAATAGGSSAPQSQTAPTSVPHAPYNSTKQAVPCIFFQKGLCLKGDRCAFLHGPNPNTSNKVPQVQVTNQVTEPPSFKKVFSGPEKSTQERKISQANVAKPVAIAGDEAKPAQKAETASHRNIAAIERYAPQPMGFDNEASRFKVVNTPPVTNGTTVARPNRVYQSHASDDHSFHNGKESDEFLRESSPGFDVLVEDELRNSDYYDGEDQYGKARGQDSMNLDSVNEYDLGHSVDYKSVADIDQERYCGPQGYDSYDHMQETYEWDHRRSSSERMFRATTHVDRMIHGRSGSPENVGVSDLRHRLSKRRRVNGLKSVVSHDYARQSHDDEQSHRFSSQKDTHQLPLNESALGNRFRGRIKLPANGGEEYVERESDRGRNRRALSPGTMQDPHHPGRFRDRLRGRVQEDFERKNLGDRPMRREINGDQDADFDGPKSLAELRNGNNSKNKEHQLLGKRKSLKEQQQSEDDFMFEGPKPLSEILKEKKAATGKSSENKEDNKDREVTNGSEDTSVTDAQNGTSPANKEDVKNQESKFQAIENAVESDTAKTDVTHDQSFEEGMMDNEVVEDQVYEGDDQKDGDYYYEQVEEGDYNFDEGENPEQEEYMDDEEDGDDFAKKIGVMLT 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1763 722 MobiDBLite consensus disorder prediction 688 711 - -
Alju12g1763 722 MobiDBLite consensus disorder prediction 265 284 - -
Alju12g1763 722 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 152 IPR000571 GO:0046872
Alju12g1763 722 MobiDBLite consensus disorder prediction 576 606 - -
Alju12g1763 722 MobiDBLite consensus disorder prediction 607 624 - -
Alju12g1763 722 MobiDBLite consensus disorder prediction 100 121 - -
Alju12g1763 722 ProSiteProfiles Zinc finger C3H1-type profile. 66 92 IPR000571 GO:0046872
Alju12g1763 722 FunFam Zinc finger CCCH domain-containing protein 17 29 92 - -
Alju12g1763 722 SMART c3hfinal6 126 152 IPR000571 GO:0046872
Alju12g1763 722 SMART c3hfinal6 68 91 IPR000571 GO:0046872
Alju12g1763 722 SMART c3hfinal6 36 63 IPR000571 GO:0046872
Alju12g1763 722 MobiDBLite consensus disorder prediction 688 709 - -
Alju12g1763 722 MobiDBLite consensus disorder prediction 542 567 - -
Alju12g1763 722 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 32 720 - -
Alju12g1763 722 MobiDBLite consensus disorder prediction 419 435 - -
Alju12g1763 722 SUPERFAMILY CCCH zinc finger 127 151 IPR036855 GO:0046872
Alju12g1763 722 MobiDBLite consensus disorder prediction 384 662 - -
Alju12g1763 722 MobiDBLite consensus disorder prediction 644 658 - -
Alju12g1763 722 MobiDBLite consensus disorder prediction 1 32 - -
Alju12g1763 722 MobiDBLite consensus disorder prediction 490 533 - -
Alju12g1763 722 MobiDBLite consensus disorder prediction 173 192 - -
Alju12g1763 722 ProSiteProfiles Zinc finger C3H1-type profile. 126 153 IPR000571 GO:0046872
Alju12g1763 722 MobiDBLite consensus disorder prediction 98 121 - -
Alju12g1763 722 MobiDBLite consensus disorder prediction 463 478 - -
Alju12g1763 722 Gene3D - 22 92 - -
Alju12g1763 722 Gene3D - 119 177 - -
Alju12g1763 722 Pfam Zinc-finger containing family 36 91 IPR041686 -
Alju12g1763 722 ProSiteProfiles Zinc finger C3H1-type profile. 35 64 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1763 Alju-ChrAlju12 38763025 38766456 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju12g1763 zf-CCCH_3 2.9e-11 CL0537