Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1759 ATGAAGCGCGAGTTCTACGAAATCTCCGACGACGAATGGGACAACCATTCCTTTAAGCCCTCTCGGGTTTTGAAGAAATCACAGACTTCTGCTCCTCCCCCGATCGAGTCCTTTGCTTTTCGGCCTGGTAAGCTTGAAAATTCTGACCAGAGTAGCGATGATTGCGTCCAAGTGGAAGGAAATTTGGAGGATGAGGATGTGGAGCCGGAGGGAGGTATGTCTGGGGCAGTGGCAAATCGTGGCCGTCGGTTTGTTGTCGACGACGATGAGGAGAGCGATGGGGATGTCGCGGAAGTGTATGAAATAAAGTCAACTGACGAGGAGGAAGTAGAAGAGGAGCAAGCGGATGAAAATGATGTGGTTGGGAGGGCTTTGTACAAGTGTGCAAAAATATCTGCAGAATTGAAAGGGGAGCTATATGGGTCGTCGGGGACTGCTTGTGATCGGTATTCTGAGGCAGAATCTTCTTCAGTGAGGATTGTAAATCAGGATGATATTGATGTGGCATGCGGGTCTGAGGATTCTGATTTCCAGCCTATCCTCAAGCCATATCAGCTGGTTGGTGTCAACTTTTTGCTCTTGTTGTATCGGAAGGGCATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGGAAAACAATTCAGGCCATCACATATCTAACCTTGTTGAAACACCTGCACAATGATCCTGGTCCACATCTTATCGTATGCCCGGCTTCTGTTTTGGAAAACTGGGAAAGGGAGCTGCAAAGGTGGTGTCCATCCTTTTCTGTTCTACAATACCATGGTTCTGGACGAGCAACATACTTCAAGGAGTTAAGCTATTTGTCTAAGGCGGGATTACCTCCTCCATTTAATGTTCTCCTTGTGTGTTATTCACTTTTTGAAAGGCACAGTGCACAGCAGAAAGATGATCGCAAAATTCTGAAGCGTTGGAAGTGGAGCTGTGTTTTGATGGATGAGGCACATGCTTTGAAGGATAAAAATAGTTATAGGTGGAAGAATCTAATGTCTCTTGCACGCAATGCAAACCAGCGTTTGATGCTGACAGGGACACCCCTTCAAAATGATCTACATGAATTATGGTCACTGTTGGAGTTTATGATGCCAGATATTTTTGCTACTGAAGATGTTGACTTGAAAAAGTTACTGAACACAGAAGACAGAGATTTAGTTGGTCGCATGAAGTCCATCTTGGGGCCATTTATTTTACGGAGGCTAAAATCTGATGTGATGCAGCAACTTGTTCCTAAAATTCAACGAGTTGAATATGTTGTAATGGAATTGCAGCAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTATTTCACAAGCTCGAATGGCAAAATGTTTGGGACCTAACTCTAATAATATTCTTGAAGTTCTTCCTCGTCGACAAATTAACAATTATTTTGTTCAGTTTCGCAAGATTGCAAACCATCCCTTGTTGATTAGGCGTATCTATAGTGATGAGGATGTCATTCGCTTTGCTAGGAAGTTACATCCAGTGGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATTGAGGAACTAAAAAGTTACAATGACTTCTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGAAAGAAAGGGTGTCCTTCCAGATAGAAGTGTTATGTCTTCTGCAAAATGTCGGGCCTTAAAAAAGCTTCTTCCTTCACTTCAGAAAGGTGGTCATCGTGTTTTAATTTTTAGTCAGTGGACGTCTATGCTTGATATTTTGGAGTGGACACTTGATGTCATTGGTTTGACCTACAGACGGCTTGATGGAAGTACACAGGTAACAGAGAGGCAAACAATAGTTGATACGTTCAATAACGACACTTCTATATTTGCTTGCTTGCTTTCCACAAGAGCTGGAGGTCAAGGCTTGAACTTGACAGGAGCTGATACTGTTGTAATTCATGACATGGATTTCAATCCACAGATTGATAGACAGGCAGAAGATCGTTGTCATAGGATAGGTCAAACAAGGCCTGTAACTATATATCGGCTGGTTACCAAGGGTACAGTTGACGAAAATGTATACGAGATTGCAAAAAGAAAGCTTGTATTGGATGCTGCGGTCCTTGAATCTGGCATGGAGATGGATGATAAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTATCTGCAATTTTGCTGGGTTAA 2196 0.4303 MKREFYEISDDEWDNHSFKPSRVLKKSQTSAPPPIESFAFRPGKLENSDQSSDDCVQVEGNLEDEDVEPEGGMSGAVANRGRRFVVDDDEESDGDVAEVYEIKSTDEEEVEEEQADENDVVGRALYKCAKISAELKGELYGSSGTACDRYSEAESSSVRIVNQDDIDVACGSEDSDFQPILKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTIQAITYLTLLKHLHNDPGPHLIVCPASVLENWERELQRWCPSFSVLQYHGSGRATYFKELSYLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSYRWKNLMSLARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLNTEDRDLVGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVVMELQQENAYKEAIEEYRAISQARMAKCLGPNSNNILEVLPRRQINNYFVQFRKIANHPLLIRRIYSDEDVIRFARKLHPVGAFGFECTLDRVIEELKSYNDFSIHRLLLHYGVNERKGVLPDRSVMSSAKCRALKKLLPSLQKGGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVTERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGMEMDDKGDMPEKTMGEILSAILLG 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1759 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 710 IPR027417 -
Alju12g1759 731 Gene3D - 162 431 IPR038718 -
Alju12g1759 731 CDD SF2_C_SNF 547 680 - -
Alju12g1759 731 FunFam Protein CHROMATIN REMODELING 19 isoform A 152 430 - -
Alju12g1759 731 Gene3D - 540 726 IPR027417 -
Alju12g1759 731 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 560 722 IPR001650 -
Alju12g1759 731 PANTHER SNF2/RAD54 HELICASE FAMILY 50 709 - -
Alju12g1759 731 Pfam Helicase conserved C-terminal domain 557 669 IPR001650 -
Alju12g1759 731 SMART ultradead3 177 382 IPR014001 -
Alju12g1759 731 SMART helicmild6 586 669 IPR001650 -
Alju12g1759 731 Pfam SNF2-related domain 201 487 IPR000330 GO:0005524|GO:0140658
Alju12g1759 731 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 372 IPR014001 -
Alju12g1759 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 407 IPR027417 -
Alju12g1759 731 CDD DEXHc_Snf 181 374 - -
Alju12g1759 731 MobiDBLite consensus disorder prediction 22 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1759 Alju-ChrAlju12 38720481 38727073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1759 202 696 RAD5 or RAD16-like Gene Family AT5G22750 26.547 2.24e-46 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju12g1759 SNF2_N 4.1e-54 CL0023