Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1739 ATGACTCGTATTCTCAAATCCACGGATAACTCAGCCGCCGCCGCCGCCGCCACCATCACCTCTGGGGCGCCGCCTCCGGAGGCCGTCGCTTTGGAATCAGACTTCGTCGTGATCCTCGCGTCTCTGCTTTGCGCTCTCATATGCACCGTCGCCCTAATAGCCGTCTGTCGCTGCACCTGGTTCCGTCGCGGTGGATCCGGAGCTGGCGGCGGAGCTCCAGGGCAGTCTCTGGCGAATAAAGGTCTGAAGAAGAAGGTGCTTCAATCCATGCCGAAATTTTCTTACATTGAGAGCAATTCCGAGAAGTGGTTGGCCACGTCGGAGTGCGCGATTTGCTTGGCCGAATTCGCCGGAGCCGACGAGATCCGAGTTCTCCCGCAGTGTGGCCACGGCTTCCACGCGGCCTGCATAGACACCTGGCTCGGATCCCACTCCTCGTGCCCTTCGTGTCGTCAGATTCTTGCTATGCCTCCTAGGTGCCGCCGTTGCGGCCTTTACCCGGCGGTTCGCGGCGTAGAATCCTCCGGAACTAGCGGGGGTGAACCGGAGCTCAAGTCCAGACACGACGATAATGCCACTACTGATAATAATGATCATGTGAATAGCTCTACAAGCAACCATCAATGGCCCAGGGATAATATTGGATTCCTTCCCTAA 657 0.5769 MTRILKSTDNSAAAAAATITSGAPPPEAVALESDFVVILASLLCALICTVALIAVCRCTWFRRGGSGAGGGAPGQSLANKGLKKKVLQSMPKFSYIESNSEKWLATSECAICLAEFAGADEIRVLPQCGHGFHAACIDTWLGSHSSCPSCRQILAMPPRCRRCGLYPAVRGVESSGTSGGEPELKSRHDDNATTDNNDHVNSSTSNHQWPRDNIGFLP 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1739 218 CDD RING-H2_EL5-like 108 151 - -
Alju12g1739 218 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Alju12g1739 218 SUPERFAMILY RING/U-box 88 161 - -
Alju12g1739 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 156 IPR013083 -
Alju12g1739 218 MobiDBLite consensus disorder prediction 172 218 - -
Alju12g1739 218 FunFam E3 ubiquitin-protein ligase ATL6 72 157 - -
Alju12g1739 218 SMART ring_2 109 150 IPR001841 -
Alju12g1739 218 MobiDBLite consensus disorder prediction 196 211 - -
Alju12g1739 218 Pfam Ring finger domain 108 151 IPR001841 -
Alju12g1739 218 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 27 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1739 Alju-ChrAlju12 38547142 38547798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1739 19 190 C3H Transcription Factor Family AT1G20823 54.301 2.23e-55 173
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2486 09 47685635 47686222 Alju12g1739 12 38547142 38547798 CCT