Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1700 ATGGGAGGGGGTAGGGAGCAGACTATACGGCCGAATTGGAACTGCAGTTTTGAAGTCAGTTTCATAATAGATATGGAAGAAGATGACAATTATATGGAGTATGTGCCTGTGGCCAAGCGTAGGGCCATGGAGGCTCAAAAGATTCTTCAGCGAAAAGGAAAATCCTCCTTCACAGTTGATGATGATTTGGAGAAATCAAGAGTGGCTGAAGCTAAACCGAGTCTTTTGGTTAAGGTGTCACAGTTGAAACGGGATCAACCTGAGATCAGTCCGACGGAGCAACTTGTTCAACAAGAAAAAGAGATGATTGAGAACTTATCAGATCGAAAAACTCTGATGTCTGTTCGGGAATTGGCTAAGGGAATCACCTATACAGACCCTTTGCCTACTGGATGGAAGCCACCTTTACCAATTAGAAGAATGTCAAAAAAAGCATGCGATTTGATTCGGAAGCAGTGGCATATAATAGTCGACGGTGAAGACATCCCACCTCCAATTAAGAATTTCAAGGATATGAGGTTTCCTGAGCCAATTTTGAAGAAGTTGAAAGAAAAAGGGATTGTTCAACCAACACCTATTCAAGTACAAGGCCTTCCTGTGATCTTATCCGGGAGGGATATGATTGGGATTGCATTCACAGGATCAGGGAAGACTTTAGTCTTTGTTTTGCCAATGATCATGGTGGCACTGCAAGAGGAAATTATGATGCCTATTGTTCCAGGAGAAGGTCCATTTGGTTTGATTATTTGCCCATCAAGGGAACTGGCTAGACAGACTTACGAAGTGGTTGAACAATTCTCGATACCGCTTAGAGAGGCTGGATATCCTGAGCTTAGGCCATTGCTTTGTATTGGTGGGGTAGATATGAGATCACAGCTAGATATTGTGAAGAAGGGTGTTCACATTGTTGTTGCCACCCCTGGGAGGTTAAAGGATATGTTAGCAAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATAGATTGGTAGATTTGGGATTTGAAGATGACATTAGAGAAGTGTTTGATCACTTCAAAGCTCAGAGACAGACGCTCTTATTTTCTGCCACTATGCCAACCAAAATTCAGAATTTTGCTAGAAGTGCTCTAGTGAAACCAGTCATTGTTAATGTGGGGCGAGCAGGGGCAGCAAATCTTGATGTAATACAGGAGGTAGAGTATGTCAAGCAAGAGGCAAAAATTGTGTATCTCCTTGAGTGCCTGCAGAAAACCCCACCTCCAGTTTTAATATTCTGTGAGAACAAGGCTGATGTGGATGACATTCATGAATATCTTCTCTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGAGGCAAAGATCAGGAAGAGAGAGAGTATGCAATTGCAGCCTTCAAGTCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCTAAGGGATTGGATTTTCCTGATATTCAGCATGTTATTAACTATGACATGCCTGCTGAAATTGAAAACTACGTTCATAGGATTGGACGAACTGGACGATGTGGCAAGACAGGCATAGCAACAACCTTCATTAACAAGAATCAAACTGAGACAACCTTACTTGACTTGAAGCATCTGTTGCAAGAAGCAAAACAACGTATTCCCCCAGTTTTAGCAGAGCTGAATGATCCAATGGAATATAATGAAGAAATCACAGATAAAAGTGGGGTCAAGGGCTGTGCGTATTGTGGGGGGCTTGGTCATCGCATTCGTGACTGCCCCAAATTGGAACATCAGAAGAGCATGGCAATTGCAAATAACAGAAGGGATTATTTTGGTTCTGGTGGATACAGAGGAGAAATATAA 1839 0.4203 MGGGREQTIRPNWNCSFEVSFIIDMEEDDNYMEYVPVAKRRAMEAQKILQRKGKSSFTVDDDLEKSRVAEAKPSLLVKVSQLKRDQPEISPTEQLVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLPTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKEKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVALQEEIMMPIVPGEGPFGLIICPSRELARQTYEVVEQFSIPLREAGYPELRPLLCIGGVDMRSQLDIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKSGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELNDPMEYNEEITDKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRRDYFGSGGYRGEI 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1700 612 Gene3D - 392 554 IPR027417 -
Alju12g1700 612 Coils Coil 524 544 - -
Alju12g1700 612 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 195 IPR014014 GO:0003724
Alju12g1700 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 528 IPR027417 -
Alju12g1700 612 CDD SF2_C_DEAD 394 522 - -
Alju12g1700 612 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 382 IPR014001 -
Alju12g1700 612 SUPERFAMILY Retrovirus zinc finger-like domains 570 591 IPR036875 GO:0003676|GO:0008270
Alju12g1700 612 SMART helicmild6 432 513 IPR001650 -
Alju12g1700 612 ProSiteProfiles Zinc finger CCHC-type profile. 571 586 IPR001878 GO:0003676|GO:0008270
Alju12g1700 612 SMART c2hcfinal6 570 586 IPR001878 GO:0003676|GO:0008270
Alju12g1700 612 Pfam Zinc knuckle 570 586 IPR001878 GO:0003676|GO:0008270
Alju12g1700 612 Pfam Helicase conserved C-terminal domain 406 513 IPR001650 -
Alju12g1700 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 553 IPR001650 -
Alju12g1700 612 FunFam Probable ATP-dependent RNA helicase DDX41 392 554 - -
Alju12g1700 612 CDD DEADc_DDX41 178 383 IPR044113 GO:0000398|GO:0003724|GO:0005524
Alju12g1700 612 Gene3D - 136 386 IPR027417 -
Alju12g1700 612 Pfam DEAD/DEAH box helicase 191 370 IPR011545 GO:0003676|GO:0005524
Alju12g1700 612 SMART ultradead3 186 397 IPR014001 -
Alju12g1700 612 FunFam Probable ATP-dependent RNA helicase DDX41 134 383 - -
Alju12g1700 612 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 159 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1700 Alju-ChrAlju12 38142108 38144295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1700 155 552 Eukaryotic Initiation Factors Gene Family AT3G19760 31.017 6.08e-57 196