LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju12g1697	ATGTTGGCAGAGTATAGGCCAATTTCTAGAGGCATTGGTGCGAAAATGGGATCCAGTAGTAGCAAAGCCAATTCCTCTTGCAGTTCGTCGTCGTCTTTCGGCAGTTTCCGGAAGGTTCGATCTAAGAAAGGGCATAAAGGATTTCAGTCGTATTGTCTGGGAACAACCTCTGGATCTCATGAAGAAAAGAATAAAGTAAATGGTAGTGGTGTCACACACAACTGTTGCACTGTGACACGATCAAATGAGATGAAATCAAAGTCTTTTAGAGATGACAAAAAGAAAATATCTGATGACATGCCTTGCAACATTGACCTTAATGAGTGGGCTCAAACAAGCATCTCCAGTAATTCCTCCAGAACTCGTAGCCGATCTGCTCGTACTTCTTCAACTGGTAGTCGATTTCTTTCTCGTTTTAGCTTTATTCCTGGTAATATAAGTTTCAGACTTAGCAGAACCACCAGTTTAGGGTCATCAAGGTCTTGCCATGTTTCTTCTACAACAATGTCAATATTCAACAATGAAGATGATCTTAGTCTGCATCCAGGACCCACTGGCAGCTTGGTTAATAGAAATGAAACTCAACAATCATCACATTCATCTGGCAACTTACAGAGTAATCCCTCAGTTTCTTCTATACAGAATGTGGTTAGAGATGGAAATGGTTCATGTGAAGGACTGGATATAAACTTGTTTCCTCCAAGAATTCATGCTGAGACTGAAAATGTTGAGGGTCGACAAAATGGAGCTCGAGAACCTGTTGAACGGAATTTTCGGTACAGCCGGACTCTAAGTGTTGGGAGGCTTCGAAATAGAGTTCTTCGTCAGTCAGCTTTATCTGATGTCAGCTTTTGCCCCCAGCAACAAGAGAGAGAAGCAAGGGATACTAGGCAGGATACAGAAAGACAAGCCAGGGAGGGAGATTCAACAGTATTACCATATATTAGTAATGCTATAAATTCTTCTTCTATGTCTGGTTATCCTCCATCCAGTATGTCTAACTCCTTATTCAGCATCCAAGACTATGAGGTTGAGAATTCGCGGTCAAGAGAAGCTAGGTACCAAGATCTGCTGGAACACAGATCCAACTTTCTTGAACGGAGAAGAAGAATAAGATCCCAGGTTCGTGCTCTGCAGCGGTTGGGGAGCCGGTTTGAAAATCTATCTGGACATGACAGATCTTGTATCCTGTCTGGTCAACATAGAAATGGTCATTGTACATGCCGAATTGGTAGTCGTGATACTAGTTCAATTGATGATACTGGTACTAGAGCTAGCATATCAAGAATTGTAATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCATCAGCAATCTGCGGTTTTATCTTCTCGCCCTTCTGTGTCTTCCATTGGATCTGTTCCTGCACCTAATGATGTAGTGGAGTCTTTGCCGGTCAGATTATACACAAAGTTGCATAAAAATCAGGAGGATGCTGCCCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGCGAGCTGCCTTGCTATCACCAATTTCATAGAGCATGCATAGACAAGTGGCTCAAGGAAATTCATAGGGTATGTCCACTATGTCGGAGGGACATCTGCATATCTGATTCACCGTCAATGGAGAACTAA	1641	0.4247	MLAEYRPISRGIGAKMGSSSSKANSSCSSSSSFGSFRKVRSKKGHKGFQSYCLGTTSGSHEEKNKVNGSGVTHNCCTVTRSNEMKSKSFRDDKKKISDDMPCNIDLNEWAQTSISSNSSRTRSRSARTSSTGSRFLSRFSFIPGNISFRLSRTTSLGSSRSCHVSSTTMSIFNNEDDLSLHPGPTGSLVNRNETQQSSHSSGNLQSNPSVSSIQNVVRDGNGSCEGLDINLFPPRIHAETENVEGRQNGAREPVERNFRYSRTLSVGRLRNRVLRQSALSDVSFCPQQQEREARDTRQDTERQAREGDSTVLPYISNAINSSSMSGYPPSSMSNSLFSIQDYEVENSRSREARYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRIGSRDTSSIDDTGTRASISRIVMLAEALFEVLDEIHQQSAVLSSRPSVSSIGSVPAPNDVVESLPVRLYTKLHKNQEDAAQCYICLVEYEDGDSMRELPCYHQFHRACIDKWLKEIHRVCPLCRRDICISDSPSMEN	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju12g1697	546	SMART	ring_2	491	532	IPR001841	-
	Alju12g1697	546	MobiDBLite	consensus disorder prediction	185	218	-	-
	Alju12g1697	546	MobiDBLite	consensus disorder prediction	174	218	-	-
	Alju12g1697	546	MobiDBLite	consensus disorder prediction	288	306	-	-
	Alju12g1697	546	MobiDBLite	consensus disorder prediction	14	33	-	-
	Alju12g1697	546	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	16	545	-	-
	Alju12g1697	546	FunFam	Putative RING zinc finger domain superfamily protein	460	538	-	-
	Alju12g1697	546	SUPERFAMILY	RING/U-box	469	539	-	-
	Alju12g1697	546	MobiDBLite	consensus disorder prediction	285	309	-	-
	Alju12g1697	546	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	454	538	IPR013083	-
	Alju12g1697	546	MobiDBLite	consensus disorder prediction	1	33	-	-
	Alju12g1697	546	ProSiteProfiles	Zinc finger RING-type profile.	491	533	IPR001841	-
	Alju12g1697	546	Pfam	Ring finger domain	490	533	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju12g1697	Alju-ChrAlju12	38114128	38118679	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju12g1697	87	545	C3H Transcription Factor Family	AT5G45290	50.105	7.82e-119	360