Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1679 ATGGAGCCCAACGACCTGTTACAGGAGCTTCTAAATATAGAGGTTGAGATTCAAGATGTTGAAGATCAAATAAGGGCATTGATTGAAAGACAAGAGCAGTTACATGAGAGAAAATCAGAGCTCAAGGCTATACTGGAAGCATGTGAAGAATCTGGAAACCAGGTCAATGATGGTGCTCGAAGTGCTGTGGAAAATTGGTCTGGGCCATTTGAATGGGACTCTCGAGCAGATGATGTCAGGCTGAATATTTTTGGCATTTCTGCATATCGTGCAAATCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGGGATGTTCTGGTGATTATGGCTGCGGGTGGTGGCAAGAGTCTCTGCTACCAGCTTCCTGCTGTTCTCTGTGATGGGATTGCTCTCGTTGTCAGTCCTTTGCTTTCTTTAATTCAGGATCAGGTTATGGGTTTGACTGCTTTAGGGATCCCGGCATACATGTTGACATCAACAACAAATAAGGAAGATGAGAAGTTCATATACAAAGCTCTGGATAAGGGTGAGGGGGATCTCAAAGTATTGTACGTCACACCAGAAAAGATTTCAAAGAGCAAGAGATTTATGTCAAAACTAGAAAAGTGTCATAAATCAGGTCGTCTCTCTCTAATTTCAATAGATGAGGCACATTGCTGTAGTCAATGGGGTCATGACTTTAGACCTGACTACAAGAACCTTGGTATTCTCAAGACTCAATTCCCTAATGTTCCATTAGTTGCTTTGACTGCTACTGCTACTCAAAGGGTCCAAAATGATCTGATGGAAATGCTGCACATTCCAAGATGTGTGAAATTTGTCAGCACAGTCAACAGACCAAACTTATTTTATATGGTAAAGGAAAAGTCATCTGTTGGTAAGGCGGTTATTGAAGAAATAGCTGGATTCATTCAAGAGTCATATGCAAATAAGGAATCTGGGATAGTTTATTGTTTCTCCAGGAAAGAATGTGAACAGGTTGCAATGGAATTAAGGGAGAGGGGAATTGCTGCAGATTACTACCATGCAGATATGGATGTACATGCTCGGGAAAAAGTTCATATGCGGTGGAGCAATAGCAAGTTGCAGGTCATAGTTGGTACGGTGGCATTTGGCATGGGAATCAACAAACCAGATGTCAGATTTGTCATCCACCACAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCCGGTAGAGATGGACTCCCATCCGAATGTGTTCTCTACTTTAGACCTGGTGATGTGCCCCGGCAGAGTTCAATGGTTTTCTACGAAAACACAGGACTGCAGAATTTGTATGACATAGTACGGTATTGTCAGTCCAAAAAAAAATGTCGCCGCAGTGCCATTTTCCAGCACTTTGCTGAGCCACCACAAGACTGCAATGGGATGTGTGACAATTGTGCATTCCCAAGTGAGGTTAAAGAATTGGACGTCTCCAGCCATGCGAAGCTGATGGTTTCTTTGTTGCAAGATATGCAAGAAAATGATCGGAGATTAACAATGTTACAGTTGGTTGACAAAATGAAAAATAAGCAGAAGGAACTAGATTTTGAGTTGAAGAAAGAGGAAATGGAGCAGCTCATCTTACAGCTTTTACTAGTGCGGGTTTTGAAAGAAGAATTTCAGCATACAGCATATGCGACAAATGCTTATGTTGCTGAAGGGCCATTGGCCAAGCAAATATTGCTAGGAAAGAAGACTGTCAAAATTGAAGTTTCTAGTGAACAGAGACCTAAGCCTGGTGTCAGATCAGTTAAACGTAGCCTCGGTTCCTCTGGTCTGGAGGTAAAGCTTGATGAGTTGAGGAAAGAATTGTCTTCCATTCATGGAGGAATACTCCCACACTCCGTCTTAACCACTCAACAAATCAGCCTCATAAGCTCTCAAAAACCGAACTCACTAGAACAGTTAGAGAAGATAATTGGAAAACTGAAGACAGAGAAGTATGGAGATAGAATACTTGCGCAAATTGAAATGTATTCTGATTTCAAGCCTCCTGATGAGAGGAATGAACAAGACTCTGAAGTTAGAGCTGCAAAGAGGTCCAAAACCAAGAAACCTATTGTGCTTCTTGAGAGCAGTGAAGAAGATGAAGCATGA 2121 0.4187 MEPNDLLQELLNIEVEIQDVEDQIRALIERQEQLHERKSELKAILEACEESGNQVNDGARSAVENWSGPFEWDSRADDVRLNIFGISAYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLCDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTNKEDEKFIYKALDKGEGDLKVLYVTPEKISKSKRFMSKLEKCHKSGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPLVALTATATQRVQNDLMEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKAVIEEIAGFIQESYANKESGIVYCFSRKECEQVAMELRERGIAADYYHADMDVHAREKVHMRWSNSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDVPRQSSMVFYENTGLQNLYDIVRYCQSKKKCRRSAIFQHFAEPPQDCNGMCDNCAFPSEVKELDVSSHAKLMVSLLQDMQENDRRLTMLQLVDKMKNKQKELDFELKKEEMEQLILQLLLVRVLKEEFQHTAYATNAYVAEGPLAKQILLGKKTVKIEVSSEQRPKPGVRSVKRSLGSSGLEVKLDELRKELSSIHGGILPHSVLTTQQISLISSQKPNSLEQLEKIIGKLKTEKYGDRILAQIEMYSDFKPPDERNEQDSEVRAAKRSKTKKPIVLLESSEEDEA 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1679 706 FunFam ATP-dependent DNA helicase 46 279 - -
Alju12g1679 706 FunFam ATP-dependent DNA helicase 480 580 - -
Alju12g1679 706 Coils Coil 10 51 - -
Alju12g1679 706 Gene3D - 280 476 IPR027417 -
Alju12g1679 706 MobiDBLite consensus disorder prediction 670 706 - -
Alju12g1679 706 Gene3D - 480 581 IPR036388 -
Alju12g1679 706 CDD SF2_C_RecQ 280 416 - -
Alju12g1679 706 Pfam Helicase conserved C-terminal domain 307 406 IPR001650 -
Alju12g1679 706 FunFam ATP-dependent DNA helicase 280 476 - -
Alju12g1679 706 CDD DEXHc_RecQ1 71 279 - -
Alju12g1679 706 MobiDBLite consensus disorder prediction 670 700 - -
Alju12g1679 706 SMART helicmild6 326 407 IPR001650 -
Alju12g1679 706 Coils Coil 512 537 - -
Alju12g1679 706 SMART ultradead3 85 288 IPR014001 -
Alju12g1679 706 FunFam ATP-dependent DNA helicase 599 669 - -
Alju12g1679 706 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Alju12g1679 706 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Alju12g1679 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 423 IPR027417 -
Alju12g1679 706 Pfam HRDC domain 604 663 IPR002121 GO:0003676
Alju12g1679 706 Pfam RecQ zinc-binding 419 475 IPR032284 -
Alju12g1679 706 Gene3D HRDC domain 599 667 IPR044876 -
Alju12g1679 706 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Alju12g1679 706 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Alju12g1679 706 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 663 - -
Alju12g1679 706 NCBIfam RecQ family ATP-dependent DNA helicase 82 506 IPR004589 GO:0004386|GO:0006310
Alju12g1679 706 Gene3D - 46 279 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1679 Alju-ChrAlju12 37996552 38005966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1679 315 421 Eukaryotic Initiation Factors Gene Family AT3G19760 20.561 1.56e-06 49.3