Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1674 ATGAGCTTATTGGTCGAACTTACAACATTGAAGGCCTATCAATACGACATGGAATATGATTCCGATAGCCCCTCACAAGATGGGAGGGATGAAGATGATGATGAAGAATATGAGGAGGCTGGCAAGGGCAACCGTTTACTGGGATTCATGTTTGGAAATGTTGATAATTCTGGTGATCTTGATGTTGATTACCTTGATGAGGATGCAAAGGAACATCTTTCTGCACTTGCTGACAAGCTTGGTCCTTCCCTGACAGATATAGATTTGTCAGGAAAATCGCCACGAACACCACCTGACGTTGTTGAACAAGACTATGGTGATAAAGCTGAAGATGCAGTTGATTATGAAGATATCGATGAAGAGTATGATGGTCCAGAGACAGAAGTTGCTACTGAAGAGGAAAATTTATTGCCCAAAAAGGAATATTTTTCTGTTGGAGCCTCTCTTGAAGCTTTGAAATCCAGATCTTCTGTCTTTGATGATGAAGATTATGATGAGGAATCTGAAAAGGAGCAAGACTTGGTGAATGATACTTCTGAAGTTGATAACATCTCTTCAACTGGGGAGCCGGTAGAGTCTCTTGTTGACGCATCTAATGGAGAGAAAAGTCAAGAAGTTGAATCACACGATGGCTCACAGCAGTCTGAAGAATCGGACACTGACTTGCAAAAACTCCAGGAGGAAGGGCCTGAAGTTTTGAAAGGTTCTACTCCATTGCCTGTTTTATGTGTTGAAGATGGGATGGTCATTTTAAGGTTCTCTGAGATTTTTGGTATTCATGAACCTTTGAGAAAGGGAGGGAGGAGAGAGCAACGGCCTTCTATTCCTAGAGATAGATACAAGTCCTTTAATGCATCTGATATTGTAGAAGAGGATGAAGAGGCATTCTTCAGAGGTTCTTCTCACGGTGTCCTGATAAATAAACAGGCTTGTGCAGTTCAAAATGGCATATCAGAAAGCAGTGATGCAGACTTGGATTCATCAAAATTTGGATTTCTGCATGGGGCTGCCTCAATGACTGCAGAAGATGGCCCACAACAGAAAGACTCTTGCCTTAGTGCTGAACCAATGAAACAAGATTGCTCAGGCCTTTCTTGGGAAGGGCATTCTCTCTTGTGTGCTGACTTTTATCCCCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGTAATTCCCCTGCTGCAAGCGACAATAATCGTGAGAGCTCTGAAATTTCTGGATCTGCGTTGGTGCCTCTAGGGCGAGATGAAGGAGAAATTGAAAGTGGGATGCTAAATATCCACTTGGAGCCGCCAAAGGAATTGGAAGAAAAAAGTCATAGTGTATTCTTGCGCACCTCTCCTGCCTCATTAGAGCCCTTTGGTTCAAGGGATTCTTCTGGAGCTGAAACTAATTCATTGTCAAAGAATCTATTTCACCCACAACTCTTGAGGTTGGAATCCAGATCTGAAGTGGATATCTCTAATCCTGCAGATGACAGAAGGGAGAATATATCTGAGGAGCATAATCAAAATGGACTAGTAAAGCATTTCACCAAACTTACCTTGCAAAACCAGGATATGGTGGATGGGTCTTGGTTAGACAAGATTATATGGGATGAGGTCAATAGACCTATTGTGAAGCCAAAGCTAATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAATTTTGGATAGTAAGGATGGTAGACATCTTCCCCTGCATGCAGGGGCAATGATTTTAACTCGTCCTTTAAAATCAAGCAATGGAGATTCTTCTGAGCTACCTGGACATGGAAATCAGCATGGATGGCGATCCATTGCTAATGATAAACATTATTCAAACAGGAAAACTTCCCAGCAACTGAAATCAAATTCTAAAAAACGCTCAGCTCATGGCGTAAAAGTTTTTCACTCTCAACCTGCGCTGAAGCTTCAGACAATGAAATTGAAACTGAGCAACAAAGATATTGCCAATTTCCACCGACCAAGAGCTTTATGGTATCCTCATGATAATGAGATGGTTGTCAAAGAACAAGGGAAGCTGCCAACACAAGGACCAATGAAAGTTATCATGAAGAGCTTGGGTGGCAAGGGGAGTAAACTGCATGTTGATGCCGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCATCTAAAAAGCTAGATTTCAAACCATTGGAAACAGTGAAAATATTTTATCTTGGGAAGGAACTTGAAGATCAGAAATCACTTGCTGCACAAAATGTTCGACCAAATTCCGTGTTACATCTAGTTCGTACAAAGATACATTTGTGGGCTAGGGCACAAAGGGTTCCTGGCGAGGACAAATCCTTGCGTCCACCTGGGGCATTCAAGAAAAAATCTGATCTATCTGTTAAAGATGGACATGTTTTTCTAATGGAGTACTGTGAGGAAAGACCTTTATTATTGAGCAATGCTGGAATGGGTGCCAGACTTTGTACATACTATCAAAAATGTTCTCCAGATGATCAGGGTGGCTCTTTATTACGCAACACAAACAGTAGCTTGGGGCATGTGATTTCACTGGATCCTGCTGATAAATCTCCATTTCTTGGAGATTTAAAGCCTGGCTGCAGTCAGTCATCATTGGAGACAAACATGTATAGAGCACCCATATTTCCTCATACAGTGCCATTAACTGACTACCTGCTTGTTCGGTCATCAAAGGGAAAGCTGTCATTAAGACGGATTGATAAAGTTAATGTTGTTGGACAGCAGGAGCCTCTTATGGAGGTATTGTCACCTGGAAGTAAGAATCTTCAGACATATATGAACAGGCTACTGGTACACATGTGCCGTGAATTTCAAGCTGCAGAAAAGCGGCACTTACCTCCATACATTCGTGCTGATGATCTGCTGTCACAGTTTCCTTACCTATCAGAAGCTTCTTTTCGCAAGAAAATTAAGGAGTATGCTATTTTACAGAAGGGAACAAATGGACAGTCAATTCTGGTTAAAAAGCGAAATTTTCGCATGTGGTCAGAAGATGAATTGAGAAAAATGGTGACGCCGGAGCTTGTTTGTGCTTATGAAAGCATGCAAGCTGGTCTCTACCGTCTAAAACATTTAGGAATTACCGAAACTCATCCTACTAATATATCTTCTGCTATGAGCCGCCTTCCTGATGAAGCAATTGCACTGGCGGCTGCATCTCACATTGAGAGGGAGTTGCAAATCACTCCCTGGAACCTGAGTAGCAATTTCGTTGCCTGCACCAGCCAGGGGAAGGAAAATATTGAGCGATTGGAAATTACTGGTGTTGGTGATCCATCTGGGCGTGGTTTGGGTTTCAGCTATGCCCGGGCTCCTCCAAAGGCACCAGTGTCAAGCGCAGTGGTGAAGAAGAAAGCAGCCGCTGCCCGGAGTGGTTCCACTGTTACTGGAACAGATGCTGATCTACGCAGATTGAGCATGGAGGCCGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCTGAGGAAGTCATTGCAAAACAAACCAGGTGGCATCGGATTGCTATGATACGCAAACTTTCAAGTGAACAAGCAGCATCTGGAGTTAAGGTTGACCCAACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGGGAGAAGTGCCAGGAGATTTGGGATCGACAAGTTCAAAGTCTTTCAGCTGTGAATGGTGATGAACATGAGAGTGATTCTGAAGGAAACAGTGATCTAGATTCTTTTGCTGGGGATCTAGAAAATTTACTTGATGCTGAGGAGTGTGAGGAGGGAGAAGAGGGTACCAATGATTTTAAACGTGACAAGGCTGATGGTGTTAAGGGTCTTAAAATGAGAAGACGTCCAACCTTAGCCCAGGCAGAGGAGGAAATAGAAGATGAAGCTGCCGAGGCTGCTGAACTCTGCAGATTACTCATGGATGATGAAGAAGATGAGAGGAAGAAAAAGAAAAAGACTAAATTTATTGTGGAGGAAGCAGGAGTAATTCCAAAACTACAGCCAAGATTTGTCTTTGACAATACAGATCAGGTGAAGCAAATAACTAGTATTGTGCAACTAGATGGAGCCAATATATTGAAAGAAAATACAGTTACAAATCTCAGGGAGGAGGATGGCGTTTCTGCTAAAAAAAGCAAATCGTTGAAGGTCAATAAAACTAAAAAGAGTGACCTTTCACCTATCAGCGTGGCAAATAAGAAAATAAAGTTAAATATAGGGGAACCGCCAAAGGTATTCAAAGAGAAAAAGCCATCAAGGGAAAGTTTTGTTTGTGGAGCTTGTGGCCAGCTTGGGCACATGAGAACAAACAAGAACTGCCCAAAATACGGTGAAGATCCAGAAGCACAACCGGAATCTGCAGACATGGAAAAAACAGGTGGAAAATCAAGCTTGTTAGATCCTTCTGGTCAGTCCCAGCATAAAGCCATTTCTAAGAAGCTTGTTTCAAAAAGCTCATCAAAAATGGCTCTGGTTGAAGCTTCCGAGGGAGAAAAAACTAGTGTGAAGGCGAAAGTTCTTCCGGTGAAGTTCAAATGCAGCTCCACTGAAAAACCTGTTATTGAAGCCACACAGAGCTCTGATAAGCCAGTCACTTCTGACTCAGAAACTGCCAAGTCTGCTAAGATTGGTAGAATCGTAATTCCCAAAAAAGTGAAGTCAGATGATATGCAAGCTGAGTCTCGTAAGCATGCCATTGCAATACGCCCTCCAACTGATCCAAGTAGAAGTCAAGTCGATTCCCATAAGCCGTCAATTAAAATCCGACCACCTGCAGAAACAGATAGAGAGCAGCCTCAAAAGAAAATTATTATAAAGCGCACAAAGGATGTTATTGACCCGGACCAGTTCAGTCCCGGTGAAAGCATGGGATTTGAGCACAGAAAAACGAAAAGAATCGTTGAATTGTCAGGCGTTGACAAGCACAGAAGACAGGAGACCATGTATAGTCCTGAAGTCGCCCTGGTAAGGCCGAAAGCTAAAGAGGATAGAAGGTGGTGGGATGAGCAAGGGAAACGGAGAAAAGAAGAAAGACTCCGTGAAGAACGTGAGGAAGAGATGAGGATGCTGAAAGAGCAAGAACAAATGAGGATGCTGAAAGAGCAACGTCAAATGAGGATGCTAAAAGAGCAAGAAAGGATAGCTGAGTTAAGAAGATTCGAAGAAACTATTAGGATGGATCGAGAGGAGGAAGAACGGCAGAAAGCAAAGAAGAAGAAGAAGAAGAAGGCTGAGTTTAGAGATGAGTATATAGATGACCACACAACAAGATTTAACAATAGAGGGTTAGAAAGAGAACGGAGTGGAAAAAGAAGATCTGTCGTTGAGTTGGGAAGATATGCAGCCGAATATACGCCACCACCTAAACGGCGCAGAGGAGGAGGGGGAGAGGTTGGTTTGGCTAATATTTTGGAACGCATTATCGAGGCACTCAAAGAACGGTACGACCTGTCGTACCTTTTCTTAAAACCCGTGTCCAAGAAAGAAGCTCCCGATTACATGGACATTATAGAGAGGCCTATGGATCTTTCAACAATCAGGGACAGGGTGAGGAATATGGAGTACAAAAGCCGCGAAGATTTCCGACACGATGTGTGGCAGATTGCGTATAATGCTCACAAATATAATGATGGGAGAAACCCAGGAATTCCTCCTCTGGCTGATCAGCTTTTAGAGCTTTGTGATTATTTGTTGAATGAGAATGATGATAGCCTAACTGAAGCTGAAGCTGGTATTGAAACTAGGGATTTCTAG 5751 0.4278 MSLLVELTTLKAYQYDMEYDSDSPSQDGRDEDDDEEYEEAGKGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPRTPPDVVEQDYGDKAEDAVDYEDIDEEYDGPETEVATEEENLLPKKEYFSVGASLEALKSRSSVFDDEDYDEESEKEQDLVNDTSEVDNISSTGEPVESLVDASNGEKSQEVESHDGSQQSEESDTDLQKLQEEGPEVLKGSTPLPVLCVEDGMVILRFSEIFGIHEPLRKGGRREQRPSIPRDRYKSFNASDIVEEDEEAFFRGSSHGVLINKQACAVQNGISESSDADLDSSKFGFLHGAASMTAEDGPQQKDSCLSAEPMKQDCSGLSWEGHSLLCADFYPLDQQDWEDEIIWGNSPAASDNNRESSEISGSALVPLGRDEGEIESGMLNIHLEPPKELEEKSHSVFLRTSPASLEPFGSRDSSGAETNSLSKNLFHPQLLRLESRSEVDISNPADDRRENISEEHNQNGLVKHFTKLTLQNQDMVDGSWLDKIIWDEVNRPIVKPKLIFDLQDDQMHFEILDSKDGRHLPLHAGAMILTRPLKSSNGDSSELPGHGNQHGWRSIANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHDNEMVVKEQGKLPTQGPMKVIMKSLGGKGSKLHVDAEETLSSVKAKASKKLDFKPLETVKIFYLGKELEDQKSLAAQNVRPNSVLHLVRTKIHLWARAQRVPGEDKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGARLCTYYQKCSPDDQGGSLLRNTNSSLGHVISLDPADKSPFLGDLKPGCSQSSLETNMYRAPIFPHTVPLTDYLLVRSSKGKLSLRRIDKVNVVGQQEPLMEVLSPGSKNLQTYMNRLLVHMCREFQAAEKRHLPPYIRADDLLSQFPYLSEASFRKKIKEYAILQKGTNGQSILVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERLEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKAAAARSGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDEHESDSEGNSDLDSFAGDLENLLDAEECEEGEEGTNDFKRDKADGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDEEDERKKKKKTKFIVEEAGVIPKLQPRFVFDNTDQVKQITSIVQLDGANILKENTVTNLREEDGVSAKKSKSLKVNKTKKSDLSPISVANKKIKLNIGEPPKVFKEKKPSRESFVCGACGQLGHMRTNKNCPKYGEDPEAQPESADMEKTGGKSSLLDPSGQSQHKAISKKLVSKSSSKMALVEASEGEKTSVKAKVLPVKFKCSSTEKPVIEATQSSDKPVTSDSETAKSAKIGRIVIPKKVKSDDMQAESRKHAIAIRPPTDPSRSQVDSHKPSIKIRPPAETDREQPQKKIIIKRTKDVIDPDQFSPGESMGFEHRKTKRIVELSGVDKHRRQETMYSPEVALVRPKAKEDRRWWDEQGKRRKEERLREEREEEMRMLKEQEQMRMLKEQRQMRMLKEQERIAELRRFEETIRMDREEEERQKAKKKKKKKAEFRDEYIDDHTTRFNNRGLERERSGKRRSVVELGRYAAEYTPPPKRRRGGGGEVGLANILERIIEALKERYDLSYLFLKPVSKKEAPDYMDIIERPMDLSTIRDRVRNMEYKSREDFRHDVWQIAYNAHKYNDGRNPGIPPLADQLLELCDYLLNENDDSLTEAEAGIETRDF 1916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1674 1916 Pfam Bromodomain 1803 1878 IPR001487 GO:0005515
Alju12g1674 1916 MobiDBLite consensus disorder prediction 109 130 - -
Alju12g1674 1916 MobiDBLite consensus disorder prediction 1517 1538 - -
Alju12g1674 1916 MobiDBLite consensus disorder prediction 608 622 - -
Alju12g1674 1916 SMART ubq_7 683 755 IPR000626 GO:0005515
Alju12g1674 1916 MobiDBLite consensus disorder prediction 1659 1679 - -
Alju12g1674 1916 MobiDBLite consensus disorder prediction 1223 1242 - -
Alju12g1674 1916 ProSiteProfiles Ubiquitin domain profile. 683 753 IPR000626 GO:0005515
Alju12g1674 1916 MobiDBLite consensus disorder prediction 202 224 - -
Alju12g1674 1916 MobiDBLite consensus disorder prediction 1579 1613 - -
Alju12g1674 1916 MobiDBLite consensus disorder prediction 1463 1485 - -
Alju12g1674 1916 MobiDBLite consensus disorder prediction 1515 1628 - -
Alju12g1674 1916 Gene3D - 1720 1915 IPR036427 GO:0005515
Alju12g1674 1916 MobiDBLite consensus disorder prediction 77 141 - -
Alju12g1674 1916 CDD Bromodomain 1802 1897 - -
Alju12g1674 1916 PRINTS Bromodomain signature 1863 1882 IPR001487 GO:0005515
Alju12g1674 1916 PRINTS Bromodomain signature 1815 1828 IPR001487 GO:0005515
Alju12g1674 1916 PRINTS Bromodomain signature 1845 1863 IPR001487 GO:0005515
Alju12g1674 1916 PRINTS Bromodomain signature 1829 1845 IPR001487 GO:0005515
Alju12g1674 1916 MobiDBLite consensus disorder prediction 154 224 - -
Alju12g1674 1916 Pfam Ubiquitin family 688 755 IPR000626 GO:0005515
Alju12g1674 1916 ProSiteProfiles Bromodomain profile. 1812 1882 IPR001487 GO:0005515
Alju12g1674 1916 Gene3D - 665 755 - -
Alju12g1674 1916 FunFam Transcription initiation factor TFIID subunit 1 665 755 - -
Alju12g1674 1916 Coils Coil 1284 1304 - -
Alju12g1674 1916 Coils Coil 1718 1748 - -
Alju12g1674 1916 SUPERFAMILY Ubiquitin-like 653 753 IPR029071 -
Alju12g1674 1916 SUPERFAMILY TAF(II)230 TBP-binding fragment 40 78 IPR036741 -
Alju12g1674 1916 SUPERFAMILY Bromodomain 1784 1905 IPR036427 GO:0005515
Alju12g1674 1916 MobiDBLite consensus disorder prediction 580 629 - -
Alju12g1674 1916 MobiDBLite consensus disorder prediction 1547 1568 - -
Alju12g1674 1916 Pfam Protein of unknown function (DUF3591) 602 1168 IPR022591 -
Alju12g1674 1916 MobiDBLite consensus disorder prediction 16 43 - -
Alju12g1674 1916 Pfam TATA box-binding protein binding 33 77 IPR009067 -
Alju12g1674 1916 Pfam Zinc knuckle 1424 1447 IPR041670 -
Alju12g1674 1916 Coils Coil 1671 1710 - -
Alju12g1674 1916 CDD Ubl_TAFs_like 683 754 - -
Alju12g1674 1916 Gene3D - 37 84 IPR036741 -
Alju12g1674 1916 SMART bromo_6 1792 1902 IPR001487 GO:0005515
Alju12g1674 1916 MobiDBLite consensus disorder prediction 1435 1485 - -
Alju12g1674 1916 MobiDBLite consensus disorder prediction 178 201 - -
Alju12g1674 1916 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 29 1915 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1674 Alju-ChrAlju12 37944710 37961182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1674 683 753 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.028 4.91e-08 52.8