Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1648 ATGGCGACCAAGTACTGCACCTTGAGAGCTCCTGCTAAAACCCTCTTCCAACTTCTTCAACCTTCTGTTCAACATTCTCGGCCGCTTTCTCAATTCATTAGAAGCATTCATTCATTCGTTTCCCGCGAATTTGATGCTCGAAAAAGTCAAAACTCTTATCCCGGAGGTTGCAGGGGCATGGTCTGTGCTCCAAATTACAATCTCGATGAAGCTGGTGCTGCTGCGCTTGCCCGTGATGATCGTGTTCCAGCTACTGTCATTACAGGTTTTCTTGGTTCTGGAAAGACGACTCTCCTAAATCATATTCTGACTTCCCAACATGGCAAGCGGATAGCTGTCATTGAAAACGAGTTTGGCGAGGTGGATATTGACGGATCATTGGTTGCTAGTCATTCTTCTGTGAGTGAAGACATTGTCATGGTTAATAATGGCTGCCTATGCTGCACTGTACGTGGGGATCTAGTTAAAATGCTGCTGGAACTGGCTAGAAAAAAACGAGATCAGTTTGATCATATTGTTATAGAAACCACAGGTCTTGCCAAGCCAGCTCCTGTTATTGAAACATTTTGCAGTGATGAACTGGTTTCTCGCTATGTAAAACTGGATGGAGTTGTGACTTTGGTTGACTCCAAACATATCATGCAGCATTTAAATGAAGTCAAACCAAGGTTTGTTGTTAATGAGGCAGTGGAACAAATTGCATATGCAGACCGTATTATTTTGAACAAGATAGATTTAGTGACTGAGTCTGAGTTGGAAGCTTTGACCAAGAAAATTAAGCATATTAATGGGATGGCACAAATTAAGCAAGCTAAATTTGGATCTGTTGACATGGACTTTGTTTTGGGTGTGGGAGGATATGATCTTGAGAGAATTGAATCTGAGGTTCACGGAGATTGTTCATCTTCTTCAAGTGATCATCATGAGTCTGGGCATGAACACAAAGGACATTATCATGACCATGAGCATGATTCTGCCGTCTCCAGTGTCAGTATTGTTTCTGAAGGAACCCTCGATCTTGATGAGCTTGATGATTGGCTGGAGAGATTGATGGAAGAAAAAGGAGAGGATCTATACAGAATGAAAGGGGTCTTGTCAGTGGATGGCTCTGATCAAAGATATGTATTACAGGGAGTGCATTCCATGATGGATGGGTGCCCGGGCAAAACGTGGGGACCTGAGGAGAAGAGGATAAATAAGCTTGTGTTCATAGGAAGGAATCTGAATGAAATTGCCCTTAGGAAAGGATTCAAAGGAGTTCCTCTGAGCGCGGAATTGAATAATGGGTTTGCCATGATGTTGCTTCAGATTCGTCGCCGAGCTTCGCTCCAACATGTTCTGTTTCAACAAACTGGAAAATCGAAGGGTGTTGTTGAGGTGGGAGTGATGGAGAGGGGTTATGAAGGAGGAGGGAATTTTGGGTTTGAGAATGCGGTGGTGATGACCAGAGATCCAAAGCCAAGGCTGAGATGGACAGCTGATCTTCATGATCGATTTGTGGATGCCGTCACCAAGCTTGGTGGCCCCGACAAAGCGACTCCCAAGTCTGTGTTGAGGTTGATGGGCTTGAAAGGCTTGACTTTGTATCATTTGAAGAGTCATTTGCAGAAATATAGACTTGGACAGCTGGCAAGGAAGCAAAACACTGAAGAACAACACAAAGAGACCAATAATATAGGTGCATATGTACATTTTAGTGATCGTTCTTCGGGGCCTAACACCAATCACATCGGCAATAACCAAACAGAGGAAATCCCATTAGCAGAGGCAGTGAAGCGTGGGATCGAAGTCCAGAAGCAATTGGAAGAGCAGCTTGAGGTACAGAAGAAATTGCAGATGAGAATAGAGGCTCAAGGGAAGTATTTGCAAGCCATGCTTGAGAAAGCACAGAAGAGCCTTTCCCTTGACATGAATGGACCAAACAACAGCCTAGAAGCAGCAAGAGCTCAGTTGACAGATTTCAACTCTGCTTTGTCCAATTTCATGGAGAATATGAACAGAGACAACAAAGAAAACATCATGGACATGAATGATTTCTACAAGAAGGCTCACAGTTCATCGGCTTTCGGAATTTACCAGGAAGCAGGCGGAGAAGACCACAAGGATCAAAAGCCTAAGGTTGAAGAAGGTTCAATACACTTTGACTTAAACATCAAAGGCAGCTATGACTTTGTATCAGCAGGTGCGGCTGAAATGGATTCCAAGGTACTTTCATACAGATTGTAA 2226 0.4362 MATKYCTLRAPAKTLFQLLQPSVQHSRPLSQFIRSIHSFVSREFDARKSQNSYPGGCRGMVCAPNYNLDEAGAAALARDDRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDGSLVASHSSVSEDIVMVNNGCLCCTVRGDLVKMLLELARKKRDQFDHIVIETTGLAKPAPVIETFCSDELVSRYVKLDGVVTLVDSKHIMQHLNEVKPRFVVNEAVEQIAYADRIILNKIDLVTESELEALTKKIKHINGMAQIKQAKFGSVDMDFVLGVGGYDLERIESEVHGDCSSSSSDHHESGHEHKGHYHDHEHDSAVSSVSIVSEGTLDLDELDDWLERLMEEKGEDLYRMKGVLSVDGSDQRYVLQGVHSMMDGCPGKTWGPEEKRINKLVFIGRNLNEIALRKGFKGVPLSAELNNGFAMMLLQIRRRASLQHVLFQQTGKSKGVVEVGVMERGYEGGGNFGFENAVVMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQLARKQNTEEQHKETNNIGAYVHFSDRSSGPNTNHIGNNQTEEIPLAEAVKRGIEVQKQLEEQLEVQKKLQMRIEAQGKYLQAMLEKAQKSLSLDMNGPNNSLEAARAQLTDFNSALSNFMENMNRDNKENIMDMNDFYKKAHSSSAFGIYQEAGGEDHKDQKPKVEEGSIHFDLNIKGSYDFVSAGAAEMDSKVLSYRL 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1648 741 Coils Coil 644 664 - -
Alju12g1648 741 CDD CobW-like 83 285 - -
Alju12g1648 741 Gene3D - 485 543 - -
Alju12g1648 741 FunFam GTP-binding protein YjiA 79 288 - -
Alju12g1648 741 Pfam MYB-CC type transfactor, LHEQLE motif 586 632 IPR025756 -
Alju12g1648 741 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 327 419 - -
Alju12g1648 741 NCBIfam myb-like DNA-binding domain, SHAQKYF class 486 541 IPR006447 GO:0003677
Alju12g1648 741 Gene3D - 306 420 IPR036627 -
Alju12g1648 741 Gene3D - 79 287 IPR027417 -
Alju12g1648 741 Pfam Myb-like DNA-binding domain 489 539 IPR001005 -
Alju12g1648 741 PANTHER COBW-RELATED 77 419 - -
Alju12g1648 741 MobiDBLite consensus disorder prediction 297 326 - -
Alju12g1648 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 292 IPR027417 -
Alju12g1648 741 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 483 543 IPR017930 -
Alju12g1648 741 SUPERFAMILY Homeodomain-like 486 541 IPR009057 -
Alju12g1648 741 FunFam Myb family transcription factor 485 543 - -
Alju12g1648 741 Coils Coil 598 618 - -
Alju12g1648 741 SMART CobW_C_3 327 421 IPR011629 -
Alju12g1648 741 Pfam CobW/HypB/UreG, nucleotide-binding domain 83 268 IPR003495 -
Alju12g1648 741 Pfam Cobalamin synthesis protein cobW C-terminal domain 327 418 IPR011629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1648 Alju-ChrAlju12 37732687 37743146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1648 467 654 G2-like Transcription Factor Family AT4G13640 49.223 4.68e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Alju12g1648 cobW 8.8e-57 CL0023