Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1635 ATGGGCGGGGGGGAATCTGGCCAACGAAAAACCCTAACCTGGCCTGGAAAAGTACTAAAACCCAAACATCAACGCTGTTCTATTTGGCGCTGGTTCACGCGGCTCTGGGATCTGCTAGAGTTGCCTTCAGTTTCAGCTTCAACCATGGGGGGTAAGAAACAGCATGATGCCACCAGAGTCAGCGAGCCAGTAGCCGAGGAATCCCCAGACTGCTCGGCAATCAAAGCAGAGAAGAAGAAAATGAAGAAGAAGAAAGACAAGCAAAACGAAGATAGTCCCAAAAGAAAGCTCGAGGAAGTTGAGGTCCAGGATAGCACCGAACCAAAAACGAAGAAGAGTAAGAAGGAAAAGATATCGAAAAAAAGCGCGGAGGAAACCATAGCCGTCGAGACAAATGACGCCGAGAACAGCGGAGAGGATGAGTCAGTGAGAGATGGGCATGTGGTTGTTACTGGAAAGAATATTAAGGATGAGAAGTATGCGCCCACAACGACATTTCCCGCATCGGGGCTTCCAAAGGAAGTCTTGGAGTGCTGCAAAAGTTTTGAAAAGCCATCCCCTATTCAGTCCCGAGCGTGGCCTTTCTTGTTGAATGGTCGTGATTTAATTGGCATTGCGGCTACTGGGTCAGGAAAAACTTTAGCTTTTGGAATACCAGCAATGATGCATGTTTTGGGCAAGCGCAAGGGTAAAGCGTCGAAGGGTCGGAATCCTCTCTGCCTTGTGCTCTCCCCCACGAGGGAATTGGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGGACTTCTTGTGGTCTGGAATCTATTTGTTTGTATGGTGGAATCTCCAAAGGGCCTCAAATATCTTCGTTAAAATCTGGCATTGACATTGTCATTGGAACTCCTGGTCGTATAAAGGATCTGATTGAAATGGGTGTTCTTTCTTTGAAAGAGGTTTCATTTGTGGTGCTTGATGAAGCAGATCGAATGCTTGATATGGGATTTGAACAAGTAGTTCGCTCCATACTGGGTCAGACTTGCTCTGTTCGTCAGATGGTTATGTTCAGTGCTACATGGCCTCTAGCAGTCCATAACTTAGCTCAAGAGTTTATGGATCCTAACCCTGTGAAAGTTGTTATAGGATCAGAGGACTTAGCTGCCAATCATGATGTTATGCAGATAGTTGAGGTCTTGGATGATCGTTCACGAGATAAACGCCTGGCTGCTTTGCTAGAAAAGTACCACAAATCGCAGAGGAATAGAGTATTGGTTTTTGTCTTGTACAAATTGGAAGCCACGCGAGTTGAAAAGATGCTTCATCAAGGGGGTTGGAAGGTTGTCTCGATACATGGGGACAAGTCGCAATATGAACGTACAAAAGCGCTATCATTATTCAAGAATGGAAGTTGTCCTTTGATGATTGCCACTGATGTGGCTGCACGGGGATTGGATATTCCTGATGTTGAAGTTGTGATCAACTACAGTTTTCCTTTAACTACAGAAGATTATGTTCATAGAATTGGTAGGACAGGACGAGCTGGGAAGAAAGGTGTTTCCCATACGTTTTTCACACAGCAGAATAAGGGACTTTCTGGGGAGCTAGTGAATGTTTTAAGAGAAGCAAATCAAATTGTGCCTGATGCTCTCCTGAAGTTTGGCACGCATGTAAAGAAAAAGGAGTCCAAGCTGTACGGATCTCACTTTAAGGAGATTTCTGCTGATGCTCCGAAGTCAAAGAAGATCACTTTTGACGATTCTGACGAAGATTAA 1749 0.4494 MGGGESGQRKTLTWPGKVLKPKHQRCSIWRWFTRLWDLLELPSVSASTMGGKKQHDATRVSEPVAEESPDCSAIKAEKKKMKKKKDKQNEDSPKRKLEEVEVQDSTEPKTKKSKKEKISKKSAEETIAVETNDAENSGEDESVRDGHVVVTGKNIKDEKYAPTTTFPASGLPKEVLECCKSFEKPSPIQSRAWPFLLNGRDLIGIAATGSGKTLAFGIPAMMHVLGKRKGKASKGRNPLCLVLSPTRELAQQISDVMCDAGTSCGLESICLYGGISKGPQISSLKSGIDIVIGTPGRIKDLIEMGVLSLKEVSFVVLDEADRMLDMGFEQVVRSILGQTCSVRQMVMFSATWPLAVHNLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDKRLAALLEKYHKSQRNRVLVFVLYKLEATRVEKMLHQGGWKVVSIHGDKSQYERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTQQNKGLSGELVNVLREANQIVPDALLKFGTHVKKKESKLYGSHFKEISADAPKSKKITFDDSDED 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1635 582 Gene3D - 109 374 IPR027417 -
Alju12g1635 582 SMART helicmild6 426 507 IPR001650 -
Alju12g1635 582 MobiDBLite consensus disorder prediction 71 128 - -
Alju12g1635 582 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 193 370 IPR014001 -
Alju12g1635 582 SMART ultradead3 181 387 IPR014001 -
Alju12g1635 582 CDD SF2_C_DEAD 384 516 - -
Alju12g1635 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 520 IPR027417 -
Alju12g1635 582 Pfam DEAD/DEAH box helicase 187 356 IPR011545 GO:0003676|GO:0005524
Alju12g1635 582 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 316 324 IPR000629 -
Alju12g1635 582 CDD DEADc 182 371 - -
Alju12g1635 582 Coils Coil 71 91 - -
Alju12g1635 582 Gene3D - 375 549 IPR027417 -
Alju12g1635 582 Pfam Helicase conserved C-terminal domain 399 507 IPR001650 -
Alju12g1635 582 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 546 IPR001650 -
Alju12g1635 582 MobiDBLite consensus disorder prediction 46 143 - -
Alju12g1635 582 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 106 542 - -
Alju12g1635 582 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 164 190 IPR014014 GO:0003724
Alju12g1635 582 FunFam ATP-dependent RNA helicase RhlB 374 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1635 Alju-ChrAlju12 37631951 37640780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1635 162 536 Eukaryotic Initiation Factors Gene Family AT3G19760 31.830 1.20e-54 189