Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1631 ATGGATCACAGAAGGCAACCCGAGGACTCGTTTTCGTACTCTAATCTTTTCAATCTCGAGTCTTTGATGAATTTTCAACTTCCACAAGAAGATGATGATTCTGATTATTATGAGAATATTAGCCAGGATGAGAGCAGAGACAGCCAAGGTGGGGCAATCGCAAATCACAGCAATGGGAGTATGCGTGAGGTAAATTTTCTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGATGAAGACAAGGGTAATTTTTGTGGAATGCAGGTGACAGAGGAGCAATACCGATCAATGCTTGGGGAACATATTCAAAAATACAAGAGGAGTTATAAAGATATCTCATCTAGTCCTTCCCAAAATCGTGTTAGTGCTCAACTTCTTAAAAGTAACACTGGTTTGAAAGTGCGGAAGTTAGTGAATGACCACCGAGGAGGAATACATGCTCCGGAGGCTACTACATCTGAGTGTCCTAATGATGTTAATCCTCAGAAACCTGTAAACTACCGTGATGCAGAATTCAGAAAGCAATATGGACCTAACAGACCTGTCTATGAGCCCACTTCGTTAGATCTTGGAGATGGCGTTACTTACAAAATTCCTCCTACTTATGATAAGTTAGCAGCAATGCTGAACCTTCCAAGTTTCTCAGATATCGGAATTGAGGAATTTTACTTGAAAGGTACCTTGGATTTGGGATCCTTGGCTGCAATGATGGCTTCTGATAAGAGAGGTGTGACTGGAAACCGAGCAGGCATGGGGCAACCCTTACCTCAATATGATTCACTTCAGGCACGATTGAAGGCCATGTCAGCTTCTAATTCACCTCATCAATTTAGTCTCAAAGTATCTGATGTTGGTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAGCGATCTATTTTGTCAGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTAAAGAGAAATGTGAGACATATGAGATCATTGAAAGAAGCCTACCTAAGAGGAAAAAGGTAAAGAAAGACCCTTCTTTGATTGAGAAGGAGGAAATGGAAAGAATTGGAAAAGTCTGGGTAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGTTTTTTACTGGTTTCCATCGAAAGCAACTTGCTGATGCCAAGAGGTTCTCAGAGAATTGTCAAAGAGAGGTCACAATGAAAGTGAGTAGATCACTTAAATTCAAGAAGAGTGTAACCATTCGCACCCGGAAACTAGCTAAGGATGTTTTGCTGTTCTGGAAACGAGCAGATAAGGAGATGGCAGAATTTCGGAAAAAAGAGGAGAAAGAAGCTGCAGAAGCTTTGAAGCGTGAACAGGAGCTTAGAGAAGCAAAGAGGCAGCAGCAACGGCTGAATTTCCTCATACAGCAAACTGAGTTATACAGTCACTTTATGCAGAACAAGTCGAACTTACTGTCCTCTGATGTTTCACCTATAGTAGATGAAAAGGCATATGATCAAGATGCTGAACTTGGCTCTTCAGATGCTGGGCCTAGCAAGGAGGAAGATCCTCAAGAGGCTGAACTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACGAGTGCTTTTGATAGTGAATGCTCGAGGCTGCGTCAGGCTGGTGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATCTGCAAACCCCCTCAACCATGCCTGTGGTATCAACAGTTCGGACACCAGAAATGTTTAAAGGCTGTCTTAAAGAACATCAGCTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGACGAAATGGGACTTGGAAAGACCATTCAAGCCATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCGTTTTTGATTGTTGCACCTACATCAGTATTGAACAACTGGAATGAAGAACTCGAGCGCTTCTGCCCTGAAATGAAAGCTCTTCCTTACTGGGGCAAGGTTCATGAGCGGACAGTACTTAGGAAAAGTATTAAGCCAAAGGATCTTTATCGTAGGGAAGCGAAATTCCACATTCTCATCACAAACTACCAGCTACTAGTATCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCTCAAGCAATTAAAAGTTCAAACAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTGCTGCTGACTGGCACACCAATTCAGAATAATATGGCAGAATTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGATAGCCATGAACAGTTTAATCAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAACATCAACTTAACAGATTGCATTCTATTCTAAAGCCTTTCATGCTGCGACGATTTAAAAAAGATGTAGTATCCGAACTGACTAGGAAAATAGAGGTTACAGTGCACTGCAAGTTGAGTTCTCAGCAAGAAGCTCTCTATCAAGCAACCAAGAATAAAATATCTCTTGCTGGGTTGTTTGATAGTAATCGTGGGCAGCTCAACGATTACAGAATGCTAAATTTAATGAATATTGTTATGCAACTAAGAAAGATTTGCAACCATCCAGAGTCGATTGGGAGGAGTGAGGGAACCACATTCTATAACTTTGCAGAGATTCCAAATTCCCTTCTGCCTCCTCCATTTGGGGAGTTGGAGGATGTATACTATTGTGGGGGTCACAATCCAATATCATACAAGATGCCAAAACTTGTCCATCAAGAAATCATGCGAGGTTCTAAATTGCTCAGTTCAAGAATTGCTCGAGGTGTTAGCAGAGAATTTTTTCAAAGACATTTTAATATTTATAGCCCGGAGAATGTTTTTCAATCAATTTTCTCTGAATCAAATGCGTCATTTATCAAAAGTGGAACTTTTAGTTTTGCCCGTTTGATGGATTTGTCCCCGCAAGAAGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTTTTCTATGGTGAGATGGGAACAGAAATTTATCAATGAAGTTGTTGACTTGATAACGGAGACTATAGATAATGATCCTGAAAACGGTTACCTTGAAAGAGGAAAAGTGAGGGCTGTTACCCGAATGTTATTGGTGCCAACAAAATCTGAGAATAGGATTTTTCAAAGAAGATTTGCTACTGGCCCCAGCCATGCCCCTTTTGAGGCATTGGTTGTCCCATATCAAGATAGGATTATATCAAATGCAAGACTTATTCAATCAGCATATTCATATATCCCTCGGACTAGAGCTCCACCAATTGTCGCCCACTGCTCAGACCGAAGCTTCTCTTATAGAACACTTGAAGAGTTGCATAACGCTTGGGTTATGAGGTTGCTTGTGGGATTTGCGCGTACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTCGGAACTACCAGCTGCACAGCCTGCTCTTCAGTTAACCTACAAAATTTTAGGTTCGTCTCCCCCTGTGCAAAATTTAGACCTAGCGAAATTACTCACTAGCTCTGGGAAGCTTCAAACGCTTGATATATTATTACAACGCTTGCGGGCTGAAAACCATCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGATGAATATTCTTGAGGACTACATGAACTATAGAAAGTATAAATATTTTAGACTTGATGGATCGACACCTCCTCATGATCGCAGAGACTTGGTTAGAGACTTCCAGCAGAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGCATTGGGTATCACCTTGACGGCTGCTGACACAGTAATCTTTTATGAGAATGATTGGAACCCCACATGGGATCAGCAGGCAATGGACAGAGCTCATCGGTTGGGTCAAACAAAAGATGTAACTGTTTACAGACTTATATGTAAAGAGACAATTGAAGAGAAGATTCTTCTTAGAGCCAGTCAAAAAAGCACTGTACAGAACCTCGTAATGACTGGTAATTCTAATGATGATACTTTTGCTCATGAGGATGTTCTATCTTTGCTTCTGGATGATGCGCAACTGGAGCGGAAATTCAAGGGAATTGCTCCTCAGGTAAAGGATAAGCAGAAGAGGAAACAAACTGTGAAGGGTATACGGGTAAATGAAGAAGGTGATGCGTATCTGGAAGATCTCACAAACTCTGGAGCACAGGGCCCAGATAATGATATTTCTCTTGACCCAGAGGGATCAGAGCCCATTCATAAAAAGAGAAAAGCTGCGTCTTACAAGCACATCGCATCAAGGGCAAGGAATTTTCAAAATACTGATCCAGCGGTCCAGAAACCCAAGAGACCAAAGAAGGCAAAGAAAGTTGACCACTCTTCTGCTGTACGGTTGAGAATCGCTACTCCAAAAGAAAAGCATTCAGAGTTCATCAGTTCTTGTTTCTGGGTGCCTCAGTGTGTAAAGTCAGAGTTATTGGCGGATCAGCCTGAAAACAAGAATGACACTGGAATTCTTGCTGCGACTTGCATGGTGCCACTGCGATCAGTTTTAATGAGCGATCTCAATTTTTGTGGATACGTACAAGCGATCTATATCAATTTTGGAGACACTGGTTATTATAAGTTCAACCCCAGGTTGATTGTTGCAGCTGAACTTAAACCCTTTACAGCTATGTTAGACAGGTTTTTCGAACATGAAGAGATCAGAGATGCTGAGAACAATAATATAGTCCTTAGTCAAAAAATCACCGACCCAAGTTTATTATTGGCTAATCTCCATGCAACCTCTAGGATAGTAGGGTGCTTGGATGGAAATGAATCCGTAGTTGCTACTCCAATCAAGGAGTATCTTGAAAATAAGGCTTCGCCTTCTACTGAGCAGCCTATTATTTTTGTGGTAGGCCAAATTCTTGGGCACGAGATCGAATCCCTCATTCATGATTACGTTCGAGTTTCTGAATCAAAGCTGGAGACTCATTCGCATCTGACGAGTGTTATTGACACGGTGGAGGAAATATTGTTTGGTTGA 5085 0.4134 MDHRRQPEDSFSYSNLFNLESLMNFQLPQEDDDSDYYENISQDESRDSQGGAIANHSNGSMREVNFLKKRKWSQNSDDEDKGNFCGMQVTEEQYRSMLGEHIQKYKRSYKDISSSPSQNRVSAQLLKSNTGLKVRKLVNDHRGGIHAPEATTSECPNDVNPQKPVNYRDAEFRKQYGPNRPVYEPTSLDLGDGVTYKIPPTYDKLAAMLNLPSFSDIGIEEFYLKGTLDLGSLAAMMASDKRGVTGNRAGMGQPLPQYDSLQARLKAMSASNSPHQFSLKVSDVGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVKEKCETYEIIERSLPKRKKVKKDPSLIEKEEMERIGKVWVNIVRRDIPKHHRFFTGFHRKQLADAKRFSENCQREVTMKVSRSLKFKKSVTIRTRKLAKDVLLFWKRADKEMAEFRKKEEKEAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDVSPIVDEKAYDQDAELGSSDAGPSKEEDPQEAELKKEALKAAQEAVSKQRKLTSAFDSECSRLRQAGETDALSQEVAGASNIDLQTPSTMPVVSTVRTPEMFKGCLKEHQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIVAPTSVLNNWNEELERFCPEMKALPYWGKVHERTVLRKSIKPKDLYRREAKFHILITNYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNQWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRFKKDVVSELTRKIEVTVHCKLSSQQEALYQATKNKISLAGLFDSNRGQLNDYRMLNLMNIVMQLRKICNHPESIGRSEGTTFYNFAEIPNSLLPPPFGELEDVYYCGGHNPISYKMPKLVHQEIMRGSKLLSSRIARGVSREFFQRHFNIYSPENVFQSIFSESNASFIKSGTFSFARLMDLSPQEVMFSATGSFMEQVLFSMVRWEQKFINEVVDLITETIDNDPENGYLERGKVRAVTRMLLVPTKSENRIFQRRFATGPSHAPFEALVVPYQDRIISNARLIQSAYSYIPRTRAPPIVAHCSDRSFSYRTLEELHNAWVMRLLVGFARTSEFNGPRKPDGPPHHLIQEIDSELPAAQPALQLTYKILGSSPPVQNLDLAKLLTSSGKLQTLDILLQRLRAENHRVLLFAQMTKMMNILEDYMNYRKYKYFRLDGSTPPHDRRDLVRDFQQRNDVFVFLLSTRAGALGITLTAADTVIFYENDWNPTWDQQAMDRAHRLGQTKDVTVYRLICKETIEEKILLRASQKSTVQNLVMTGNSNDDTFAHEDVLSLLLDDAQLERKFKGIAPQVKDKQKRKQTVKGIRVNEEGDAYLEDLTNSGAQGPDNDISLDPEGSEPIHKKRKAASYKHIASRARNFQNTDPAVQKPKRPKKAKKVDHSSAVRLRIATPKEKHSEFISSCFWVPQCVKSELLADQPENKNDTGILAATCMVPLRSVLMSDLNFCGYVQAIYINFGDTGYYKFNPRLIVAAELKPFTAMLDRFFEHEEIRDAENNNIVLSQKITDPSLLLANLHATSRIVGCLDGNESVVATPIKEYLENKASPSTEQPIIFVVGQILGHEIESLIHDYVRVSESKLETHSHLTSVIDTVEEILFG 1694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1631 1694 MobiDBLite consensus disorder prediction 1414 1436 - -
Alju12g1631 1694 Coils Coil 426 465 - -
Alju12g1631 1694 Gene3D - 1528 1692 IPR029026 -
Alju12g1631 1694 MobiDBLite consensus disorder prediction 1456 1479 - -
Alju12g1631 1694 ProSiteProfiles DBINO domain profile. 354 479 IPR020838 GO:0003677
Alju12g1631 1694 SMART ultradead3 585 783 IPR014001 -
Alju12g1631 1694 Gene3D - 585 826 IPR038718 -
Alju12g1631 1694 MobiDBLite consensus disorder prediction 43 60 - -
Alju12g1631 1694 Pfam Helicase conserved C-terminal domain 1210 1319 IPR001650 -
Alju12g1631 1694 MobiDBLite consensus disorder prediction 496 520 - -
Alju12g1631 1694 PANTHER HELICASE SRCAP-RELATED 90 528 - -
Alju12g1631 1694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 819 1361 IPR027417 -
Alju12g1631 1694 SMART helicmild6 1236 1319 IPR001650 -
Alju12g1631 1694 CDD SF2_C_SNF 1205 1330 - -
Alju12g1631 1694 Gene3D - 827 896 IPR027417 -
Alju12g1631 1694 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 601 772 IPR014001 -
Alju12g1631 1694 Pfam SNF2-related domain 605 891 IPR000330 GO:0005524|GO:0140658
Alju12g1631 1694 Pfam DNA-binding domain 349 478 IPR020838 GO:0003677
Alju12g1631 1694 FunFam Putative DNA helicase INO80 561 839 - -
Alju12g1631 1694 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1210 1369 IPR001650 -
Alju12g1631 1694 MobiDBLite consensus disorder prediction 30 60 - -
Alju12g1631 1694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 817 IPR027417 -
Alju12g1631 1694 Gene3D - 1177 1415 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1631 Alju-ChrAlju12 37586481 37601994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1631 642 888 RAD5 or RAD16-like Gene Family AT1G61140 24.444 2.90e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju12g1631 SNF2_N 2.8e-66 CL0023