Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1608 ATGGTGGAAGGAAGAGTTTGTTTGCCCAAGGAAGCTAGAAAAGTATTAGAATCTTTGAAGCGTAAAAGGCTTCACCGAGCAAAATCTTCAACTGCCAACAACACACGTGTTGCTAATATGATGACAAGAAGTGGAGGAGATGCTTTAAGGGCTTCGTCATCATATGGTATGAGATTGCATGGTAATGCAGAAGCCTTTTCCAAGCGGAAGGTGGATAAGTTTGACATGAGTGATCTAGAATGGACTGAAAAAATTCCCGAGTGTCCTGTGTTCTCCCCAACTAAGGAGGAATTTGAGGACCCTTTGGTGTATTTGCAAAAGATAATTCCTGTGGCTTCAAGATATGGTATATGCAAGATTATTTCTCCTTTGAGTGCTTCCGTTCCTGCTGGAGTTGTGTTAATGAAGGAGAAAGCAGGATTTAAGTTTGCGACCAGAGTACAGCCACTTCGCCTTTCTGAGTGGGATACTGAAGACAAAGTCACATTTTTCATGAGCGGAAGAAATTATACATTTCGCGATTTTGAAAAAATGGCGAACAAGGTTTTTGCACGTAGATATTGCAGTGCTGGATGTCTTCCTGCCTCATTTTTGGAAAAAGAGTTTTGGCACGAAATTAGCTGTGGAAAGATGGAAACTGTAGAATATGCGTGTGATGTAGATGGTAGTGCCTTTTCCTCTTCTCCCAATGATCAACTTGGGAGCAGCAAATGGAATTTGAAGAAGCTTTCTCGGCTGCCCAAATCCATTTTGCGGCTCTTGGAAACAGTAATTCCGGGAGTAACAGAACCCATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTTGAGGATCACTATTTGTACAGTATTAATTATCATCATTGTGGGGCATCAAAAACTTGGTACGGAATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTAAGAGAACATGTGTATACTAATGATATTCTGTCAAGTGAAGGGGAAGATGGAGCCTTTGATGTTCTTCTGGGGAAAACAACTCTGTTTCCTCCAAATATTTTGTTGGAACATGAAGTGCCGGTCTACAAAGCTGTTCAAAAACCGGGAGAGTTTATTGTAACCTTTCCTAGAGCGTATCATGCTGGTTTTAGTCATGGTTTTAACTGTGGAGAAGCAGTGAATTTTGCTATTGGTGATTGGTTTCCATTAGGGGCCATTGCCAGCAGGCGATATGCACATCTAAACAGGGTTCCGCTGCTACCTCTCGAAGAACTTTTATGCAAAGAAGCAATGCTCCTCTATACAAGTTTAGAACTTGAAGATTCAGATTTTCCTTCTGCAGACTCGATGTTTCATAATAGCATCAAGATCTCTTTTGTTAATTTGATGCGCTTCCAGCATTGTGCTCGCTGGTTCTTAATTAAATCAGGGGCGTGCACAAATGTTTCTTCACACTCCCATGGCTCAATTCTCTGTAGTCTCTGCAAACGTGATTGCTATGTAGCATATGTTGACTGTGACTGTCACATGCATCCTGTGTGTCTTCGCCATGATATCAAATCTCTTGACTTCACCTGTGGAAACAAACGCACTCTTTACTTGAGGGAGGATATTGAAGATATGGAAGCTGCGGCCAAGAGGTTTGAGCAGGAAGATGGTATATCGGATGAGATAATTAAGCAGATCAAGGCTGACAATAACATGTATTCATATCCCATGTCAAATATGTTTCAGAGAGCTGAAGCCGATGGACATACCCCTTATTGCGAGATAAAATTTGATCCTGATGTTGAATCTTCTCACTCAGGCTCAGATCAGTTGATGAATATTCAAGAGTGTGCTATTCAAAGTCAATGGGCTTTGAGGCATTGCTCAGGGTCAGAATATCACAAATCCGAAGTGTATGATGTTTCCTTCGTTTCTGCTGCTTCTGCTCTTTGCTCTCTTTCTGATCCTCTTGAGAGTTATTCTTCTACTTCTAAAAACGATGAGGGGCGTGCAAACTCGGGCATTATTAATTCTGAAGAGCTTTGTGAAGGAGTGTCCAACAGTGTATGTGAATCTTTAGCATCCCCTACACGGAATCACGACAGCTCGATTAAACCTCAGGGTGGTGATCTTTATCGATTAGAGATGAAATCGATGGCGCATATTGACAGTGATGATTCTGATTCAGAGATATTTAGGGTAAAGCGGCCTTCTTATTTGAAGGCAGAGAGGAGAAATGGTAACGATGGGATGGGTCCCAAACATTCTGACCACCAGGGACTAAAACGATTGAAGAAAAACTGTGATGAAGGAAGAAGTGGGCAACTAATAGGGTACAGCAGCAAAAGCAGTGAATCAAGTTGCAACAAGTGGAGGCAGCCAGCAAATCACAAAATTGATGGCGAAAGCTGTACGAGGGAAAGATATACGAAGGTTAATAATGGCATTCCAATTTCCATAAGGTACAAGAAACTGGGAAAGGAGGACTCAAGCGGACAAGGAGATCACCAAAAGAGTAATTGGCTGCAACAGAGTATAATGGAACCATCGTCTCCCACGGAGGTTGGGATTGGACCAAAGCGGCTCAAAGTGCGAGGCCCTTCATTCCTGAGCTTATAG 2586 0.4223 MVEGRVCLPKEARKVLESLKRKRLHRAKSSTANNTRVANMMTRSGGDALRASSSYGMRLHGNAEAFSKRKVDKFDMSDLEWTEKIPECPVFSPTKEEFEDPLVYLQKIIPVASRYGICKIISPLSASVPAGVVLMKEKAGFKFATRVQPLRLSEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPASFLEKEFWHEISCGKMETVEYACDVDGSAFSSSPNDQLGSSKWNLKKLSRLPKSILRLLETVIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSEGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIVTFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYAHLNRVPLLPLEELLCKEAMLLYTSLELEDSDFPSADSMFHNSIKISFVNLMRFQHCARWFLIKSGACTNVSSHSHGSILCSLCKRDCYVAYVDCDCHMHPVCLRHDIKSLDFTCGNKRTLYLREDIEDMEAAAKRFEQEDGISDEIIKQIKADNNMYSYPMSNMFQRAEADGHTPYCEIKFDPDVESSHSGSDQLMNIQECAIQSQWALRHCSGSEYHKSEVYDVSFVSAASALCSLSDPLESYSSTSKNDEGRANSGIINSEELCEGVSNSVCESLASPTRNHDSSIKPQGGDLYRLEMKSMAHIDSDDSDSEIFRVKRPSYLKAERRNGNDGMGPKHSDHQGLKRLKKNCDEGRSGQLIGYSSKSSESSCNKWRQPANHKIDGESCTRERYTKVNNGIPISIRYKKLGKEDSSGQGDHQKSNWLQQSIMEPSSPTEVGIGPKRLKVRGPSFLSL 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1608 861 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Alju12g1608 861 MobiDBLite consensus disorder prediction 815 850 - -
Alju12g1608 861 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 789 - -
Alju12g1608 861 Gene3D Cupin 81 410 - -
Alju12g1608 861 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Alju12g1608 861 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Alju12g1608 861 Pfam jmjN domain 89 121 IPR003349 -
Alju12g1608 861 MobiDBLite consensus disorder prediction 824 840 - -
Alju12g1608 861 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Alju12g1608 861 SMART JmjN_1 87 128 IPR003349 -
Alju12g1608 861 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Alju12g1608 861 SMART cupin_9 235 405 IPR003347 -
Alju12g1608 861 FunFam Lysine-specific demethylase isoform A 83 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1608 Alju-ChrAlju12 37366409 37371854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1608 85 544 JUMONJI Transcription Factor Family AT2G34880 32.593 6.87e-64 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Alju12g1608 JmjC 4.2e-39 CL0029