Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1596 ATGGACGGAGTTAATAACAGCGGCTCCGGCAGCGGCACGCAGACGCCAGCTCCGGCTCCGGCTCCGATTCCCAATACCAACGCGCCTCCTCCGTTTCTTAGTAAGACATATGACATGGTGGATGACCCGTCCAGTGATGCGATCGTTTCTTGGAGCTCAACCAACAATAGCTTTGTGGTTTGGAACCCTCCCGAGTTTGCCAGGGACCTTTTGCCCAAGTACTTTAAGCACAATAACTTCTCCAGCTTTGTTAGGCAGCTGAATACATATGGTTTCAGGAAGGTCGATCCAGATCGGTGGGAATTTGCTAATGAGGGCTTTTTGAGGGGTCAGAAGCACTTGCTTAAGAGTATAACCCGGCGAAAACCTGCCCATGGTCATAGTCATAAACAGGCACAACAATCTCATGGGCAGAGTTCGTCTGTAGGGCCATGCGTAGAGGTTGGGAAGTTTGGTCTAGAGGAAGAAGTTGAAAGGCTCAAAAGAGATAAGAATGTGCTCATGCAGGAGCTTGTGAGGTTGAGACAGCAGCAACAGGCCACTGATAACCAGATGCAACAAATGGTTCAGCGCCTTAAGGGGATGGAACAACGTCAGCAGCAAATGATGTCATTCCTTGCAAAGGCTGTCCAGAGCCCTGGCTTCTTGACTCAGTTTGTACAACAGAAAAATGAGAGCAATAGGCGCATAACAGAAGCCAACAAGAAACGACGGCTTAAGCAGGATGGTATTGCTGAAACAGAGTGTGCTTCTGCTTCTGATGGACAAATTGTTAAGTATCAACCTTTGGTGAATGAAGCTGCTAAAGCAATGCTAAGGCAGATCATGAAATTGGATACCCCTTGGCTAGAACCTTTCAGTAATAACTCAGACAATTACTTGATTGGCGATAGGTCAACATCATCAGGGGCAATGGATAGTGGCAGCACTTCAAACCGGAGCTGTGGAGTAACCCTTCAAGAGGTCCCCCCAACTTCAGTGAATGCTCCCTCAGCTGGCAAATCTGAAATACAATCTTCTCCACAGTCTGCAGCTTCTGAAAAAGTTACAGCTGCTCAATACCCTGATGTAAATGTGCTGGTTGGTGCTTCTGAGAAACCTACTGTCCCTGTATCTGAGGTAGATGTCATGCCTGAGCTTTCTCAGATACCAGAGATGGCGGGAGGAAGTATTCTTGATATTCCTGAAGAGAATTATATGGCACCTGAAACAGGAAATGATGGATTCATGGATCCTAACATATTGGGGGCAAGCGGGGAGATGCCCATTGATTTTGGTAGTATTTCACCTGATACAGACATTGATGACTTTTTACGCAACTCTTCTTTTTGGGATGACTTGGTGCAAAGTCCGCTGCCTGAGGATATCGAGATTGATACTGCTGATGCGTCCAAGGGAAATGAGGTGCAGCCAGTGGAAAATGGATGGGACAAAGCGGAACATATGGATCAACTTACAGAGCAGATGGGTCTCCTTTCTTCTGATTCAAAAAGAGTTTGA 1500 0.468 MDGVNNSGSGSGTQTPAPAPAPIPNTNAPPPFLSKTYDMVDDPSSDAIVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGHSHKQAQQSHGQSSSVGPCVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQMQQMVQRLKGMEQRQQQMMSFLAKAVQSPGFLTQFVQQKNESNRRITEANKKRRLKQDGIAETECASASDGQIVKYQPLVNEAAKAMLRQIMKLDTPWLEPFSNNSDNYLIGDRSTSSGAMDSGSTSNRSCGVTLQEVPPTSVNAPSAGKSEIQSSPQSAASEKVTAAQYPDVNVLVGASEKPTVPVSEVDVMPELSQIPEMAGGSILDIPEENYMAPETGNDGFMDPNILGASGEMPIDFGSISPDTDIDDFLRNSSFWDDLVQSPLPEDIEIDTADASKGNEVQPVENGWDKAEHMDQLTEQMGLLSSDSKRV 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1596 499 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju12g1596 499 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju12g1596 499 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju12g1596 499 MobiDBLite consensus disorder prediction 297 349 - -
Alju12g1596 499 Coils Coil 150 198 - -
Alju12g1596 499 SUPERFAMILY "Winged helix" DNA-binding domain 28 121 IPR036390 -
Alju12g1596 499 Gene3D - 25 122 IPR036388 -
Alju12g1596 499 FunFam Heat shock transcription factor 1 25 122 - -
Alju12g1596 499 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju12g1596 499 MobiDBLite consensus disorder prediction 119 142 - -
Alju12g1596 499 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju12g1596 499 Coils Coil 216 236 - -
Alju12g1596 499 MobiDBLite consensus disorder prediction 1 16 - -
Alju12g1596 499 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju12g1596 499 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 26 317 IPR027725 -
Alju12g1596 499 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1596 Alju-ChrAlju12 37276141 37282411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1596 8 496 HSF AT1G32330 53.846 2.46e-172 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju12g1596 HSF_DNA-bind 4.1e-33 CL0123