Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1592 ATGGGTAGGCCACCGTGTTGTGCGGAGACAGGTGTGAAGAAAGGGCCATGGACGCCTGAAGAAGATGAGAAGCTCATGGCTTATATCAGTAAACATGGCAGTGGAAGCTGGAGAACACTTCCAAAGCATGCCGGCCTCAACCGATGCGGCAAGAGCTGCCGGCTACGGTGGACCAATTATCTCAGGCCTGATATCCGGAGAGGCAAATTCACCGAAGAAGAAGAGAAAATGATCATCAACCTTCATTCTCTTCTTGGAAACAAGTGGTCGAAGATTGCGACGCATCTTCCAGGGAGGACTGACAATGAGATTAAGAATTTCTGGAACACTAATTTAAGGAAGAAGCTTCTACAGATGGGTATTGATCCTGAAACTCACAAGCCTAGAACTGACTTGAAGCATCTCCTTAATCTCTCCCAGTTGCTTGGCCTGGCTAATAATAATAATAACATCTTGATGAGTCTTCTGGGTTTACAGCATCCAGATTTGAGTCATCAGTTAGTCCAAATCCAACGTCTGCAGAATCTGTTGAGTAACGTGCAGAGTATTCTCCCACTCTTGGGTAATCACAACAGTTTGTTCAATAACCCAATAATGGAAGCAGATACAACAAATGGTACAAACAGTACTCTCCCCAACAAGAAAGAGTCTCTCTTGAGAGAGCAAGAATTACATGCAAGCCCTGCTTTATTTCCTTCAGCACCAAGTGAATCATGGACAGAATCATGGACAGACCAAGAAGGAGCATTATCAGATCAACAAGTTTTGGGTACTAATAATAGTATCATCAGCAGAACAACTTCACATGAAATAATGAATCAAGCTGATGAGAATCCATTTGGTGCAACAAGTTCAGGAAACTTCAACCAAATGGAAGGAAGGTCTAACCTGCAGTCTCCTCCATCCACAGTCTTTGATGCTTGGGACAAACTCTTGGCAGATGATGATGCAAGCGATTCTTATTGGAAAGAACTTTTAGAGATCACTTTTGTTAATCTTGACTCGCTAAACAAAACAAGGGAGCAGTTAGAGATCGAGACAGCTGCATTATTGAGAATTATAAAATGGAAAGCAGCCATTGATACCAATGAACTTGAGAATGACGAACAACAAGAAAACGACAAAGTTGATTGCCACACTGATGACAAAATGGCTAGCCAGCTTTGTATAATGGGAAGACCACCATGTTGTGAGGAGAGTGGTGTGAAGAAAGGGCCATGGACGCCTGAAGAAGATGAGAAGCTTTTTAATTATATCAGCAAACATGGCAGTGGAAATTGGAAAACAGTTCCAAAGCATGAGGGCCTCAATAGATGCGGCAAAAGCTGCCGGCTACGGTGGACCAACTATCTCAGGCCTGATATCAAGAGAGGCAAATTCACTGAAGAAGATGAGAAATTGATCATCAACCTTCAGTCTATTCTAGGAAACAAGTGGTCGAAGATTGCAACGCATCTTCCAGGGAGGACTGATAATGAAATTAAGAATTTCTAG 1494 0.4277 MGRPPCCAETGVKKGPWTPEEDEKLMAYISKHGSGSWRTLPKHAGLNRCGKSCRLRWTNYLRPDIRRGKFTEEEEKMIINLHSLLGNKWSKIATHLPGRTDNEIKNFWNTNLRKKLLQMGIDPETHKPRTDLKHLLNLSQLLGLANNNNNILMSLLGLQHPDLSHQLVQIQRLQNLLSNVQSILPLLGNHNSLFNNPIMEADTTNGTNSTLPNKKESLLREQELHASPALFPSAPSESWTESWTDQEGALSDQQVLGTNNSIISRTTSHEIMNQADENPFGATSSGNFNQMEGRSNLQSPPSTVFDAWDKLLADDDASDSYWKELLEITFVNLDSLNKTREQLEIETAALLRIIKWKAAIDTNELENDEQQENDKVDCHTDDKMASQLCIMGRPPCCEESGVKKGPWTPEEDEKLFNYISKHGSGNWKTVPKHEGLNRCGKSCRLRWTNYLRPDIKRGKFTEEDEKLIINLQSILGNKWSKIATHLPGRTDNEIKNF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1592 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 456 497 IPR017930 -
Alju12g1592 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Alju12g1592 497 CDD SANT 16 61 IPR001005 -
Alju12g1592 497 Gene3D - 459 497 - -
Alju12g1592 497 SUPERFAMILY Homeodomain-like 401 496 IPR009057 -
Alju12g1592 497 Coils Coil 333 353 - -
Alju12g1592 497 FunFam Transcription factor MYB39 69 130 - -
Alju12g1592 497 SMART sant 456 497 IPR001005 -
Alju12g1592 497 SMART sant 13 63 IPR001005 -
Alju12g1592 497 SMART sant 403 453 IPR001005 -
Alju12g1592 497 SMART sant 66 114 IPR001005 -
Alju12g1592 497 Gene3D - 68 135 - -
Alju12g1592 497 CDD SANT 69 112 IPR001005 -
Alju12g1592 497 FunFam MYB-related transcription factor 13 66 - -
Alju12g1592 497 CDD SANT 406 451 IPR001005 -
Alju12g1592 497 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Alju12g1592 497 Pfam Myb-like DNA-binding domain 457 496 IPR001005 -
Alju12g1592 497 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Alju12g1592 497 Pfam Myb-like DNA-binding domain 404 451 IPR001005 -
Alju12g1592 497 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju12g1592 497 ProSiteProfiles Myb-like domain profile. 452 497 IPR001005 -
Alju12g1592 497 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju12g1592 497 Gene3D - 13 66 - -
Alju12g1592 497 FunFam MYB-related transcription factor 403 456 - -
Alju12g1592 497 ProSiteProfiles Myb-like domain profile. 399 451 IPR001005 -
Alju12g1592 497 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 251 - -
Alju12g1592 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 61 IPR017930 -
Alju12g1592 497 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju12g1592 497 CDD SANT 459 497 IPR001005 -
Alju12g1592 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 399 455 IPR017930 -
Alju12g1592 497 Gene3D - 397 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1592 Alju-ChrAlju12 37242295 37249219 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1592 391 497 MYB Transcription Factor Family AT5G16770 74.766 3.52e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju12g1592 Myb_DNA-binding 2.1e-16 CL0123