Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1588 ATGGCTTCTCTTGGGAATCCCAGAAGCTGGGTTCCATACATGAACAATAAAGACTGTTCTCAAGGATTCTGTAGTCTCTACTGTCCACAGTGGTGTTACATAGTGTATCCTCCTCCTCCTCCCTTTGAATTTCCTGAAGACAATTCAAGCCCTAATTTTTCACCTCTGGTTATAGCAGTCATTGGAATCTTGGCCAGTGCTCTGCTTCTTGTGAGCTACTATACCATAATCTCCAAGTACTGTGGCAACCCAGAATCCTCAGATACACAGAATCATAACGACCCTTCAAATGAAGCTGAACACTTTCACAATCCTTCCCTTCACGAACCATGGCAAGCGTCACCAAGGGGTCTAGACGAGGCTCTGATAAAGTCCATCACAGTGTGTAAGTACAAGAAAGAAGATGGGTTGGTCTCTGTAGCAGATTGCTCTGTTTGTCTCAGTGAGTTCAAAGATGATGACACTATCAGGCTCTTGCCTAAGTGCAGCCATGCTTTTCACATCCCTTGTATTGACACGTGGCTCAAATCTCACTCCTCTTGCCCTCTCTGTCGTGCTAGCATTTTCACCTTCAACGCTTCGGCTCTTTTGGTTTCTGATTCTACGACGGAGAATTCCAGTTTTCAGGAAAATCAACCTGGGATTGAGAACAATGAAGAGGTGGGTTCAGCTGTTGAAGAAGAAAGTGAAGAAACCAGACAACATAGCAGAGCTCCGAAGCCTACATTGCGTGCAATGAGTGACTTGGGGAATTTGCAGGGAAGGCATAGTGTGATTGAGATAAAAGACGAAGGGTTCGTTGAGCCATTTAGAAGGTCAGTTTCTATGGACCATTCATTTCAAAGTGACAACAGAGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGCTCTGTGAATGAAGCAGGTCCATCAAAGAGATCTCAAGGAGGAGAAAGCAGCAAATGTAACAGCAGAAGAAGGGTATTGCAGTGTGTATTGAGTCCGATTGTAATGAAGAGATCGTTTTCAAGTGGAAGATTCTCCATCATCGGAGGAAGAAGGCAGGGGATAATCCCTATATGA 1065 0.4423 MASLGNPRSWVPYMNNKDCSQGFCSLYCPQWCYIVYPPPPPFEFPEDNSSPNFSPLVIAVIGILASALLLVSYYTIISKYCGNPESSDTQNHNDPSNEAEHFHNPSLHEPWQASPRGLDEALIKSITVCKYKKEDGLVSVADCSVCLSEFKDDDTIRLLPKCSHAFHIPCIDTWLKSHSSCPLCRASIFTFNASALLVSDSTTENSSFQENQPGIENNEEVGSAVEEESEETRQHSRAPKPTLRAMSDLGNLQGRHSVIEIKDEGFVEPFRRSVSMDHSFQSDNRVEEEEEEEEEGSSVNEAGPSKRSQGGESSKCNSRRRVLQCVLSPIVMKRSFSSGRFSIIGGRRQGIIPI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1588 354 CDD RING-H2_EL5-like 142 185 - -
Alju12g1588 354 PANTHER RING-H2 FINGER PROTEIN ATL16 41 319 IPR044600 GO:0016567|GO:0016740
Alju12g1588 354 SMART ring_2 143 184 IPR001841 -
Alju12g1588 354 MobiDBLite consensus disorder prediction 204 218 - -
Alju12g1588 354 Pfam Ring finger domain 142 185 IPR001841 -
Alju12g1588 354 SUPERFAMILY RING/U-box 123 190 - -
Alju12g1588 354 MobiDBLite consensus disorder prediction 204 246 - -
Alju12g1588 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Alju12g1588 354 FunFam RING-H2 finger protein ATL54 118 191 - -
Alju12g1588 354 MobiDBLite consensus disorder prediction 301 318 - -
Alju12g1588 354 MobiDBLite consensus disorder prediction 277 318 - -
Alju12g1588 354 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1588 Alju-ChrAlju12 37213923 37214987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1588 1 241 C3H Transcription Factor Family AT3G03550 45.318 3.76e-70 221